BAC Information

Click to search

BAC

Clone NameMSMg01-492M20
Chromosome2 (Build37)
Map Location 173,573,299 - 173,573,831
singlet/doubletsinglet
Overlap geneVapb
Upstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik
Downstream geneLOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492M20.T7 (MSMg01no492_m20.b1)MSMg01-492M20.TJ (MSMg01no492_m20.g1)
ACCAG570471AG570472
length720723
length of high quality
(start - end)
533 (76 - 608)193 (318 - 510)
definitionCHROMAT_FILE: MSMg01no492_m20.b1 PHD_FILE: MSMg01no492_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:07 2005CHROMAT_FILE: MSMg01no492_m20.g1 PHD_FILE: MSMg01no492_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCCGCGGATTC
CATAACTTTCTCTAAAATAGAAGATGTTTGAGCAGAGCCTTGAAGAATGA
GCATACTTCCCAAAGCAGAGGAGGGCCCTGGTTCTTCAGTAATAGGGAAA
CCAGACTAGAATCCACCCTAACCAACCAGCTACATGCTGCCCTTTTTCCC
ATTGGTGAAATGAGAAAGCCAGTTGAGCAGAGACACAGAAGGCCAGACAT
ATCTTCCATGGTCTGTGTTGTCTGTAGCTAAGAGGGGCAACTTTGGGGAA
TCCTGTATCTTGAGAGATTAAAACTACCATGAGCCATTATTTGTATTGCA
GTAGCTGCAACCTAGAGAAGTTGGGGCCCTTGATTAGGGTCACTCCAGCC
CCTAGGCTGGGTGTCTCTCAGCTGGCTCCTCTGTGCACTTAGACTGTGTT
TAGGGGAAGTGGCTTGCTCTATATGGTCACAGTGACCATGAATTTTGGTC
TTTTATGTAGAGAAAAATTACTAGGTGTTTGTTAGTTGATGGGGTGAAGA
ATATGCACAGAAAAACTTGTCTTTTGAAGATTTTTGGGGGATGGATATAT
AGGATTCAGCTTGCATTTTGGTCTGTCCTGCTGGATATCCTAAAGAAGTG
TAAAGGGCTGCGCTGGCTGTAGGCAGCCGGTTTTCTATTTAGGAAGATCA
GGAATACCACAGTAAATCTG
ACTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAGTTTAGTTCTATACCCCACTTTTGATTG
GGTTGTTTGGTTTTGTGGTGGCTAGTTTCTTGAATTTTTAACATATTTTA
GATACTAGCCCTGCAGATGTTCCACTACAGAAGAATGGATACAGAAAATG
TGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAACCAGTATAT
CCTGAGTTTTGCAGGCAAATGAATGGAACTAGAAGATATTATCCTGAGTG
AGGTAACTCATATTTTAAAGGACATGCATGGTATTTACTCACTAATATGT
GGGTATTAGCCAAAAAAAAAAGAAGCTCAGAAGACCCAAGATACAGTCCA
CAGAACTCAAAAAGCTCAACAAGCTGAAGGGCCCAATCAAGGATGCCAAA
GTACCACTTCAGAGGGAGAAAAAAGCAACCACAATGGGGGAGGGAGGGAG
AGACTGAGAGGGGATGGGGGAGAGATGACCTCCTTTCCTTGTTTCTCTCC
CCTTCCCTTTCTTCTTTCTTTTTCCTCTCTCTTCACATTTCCCTTCTTTC
CTTCCTCTTTTCATTTTTCCCTTTTTCTTTCTTTTCTTTTTCCCTCCTTT
TTTCCTTTTCTCCCCCTTCTTTTTCTTCTGGCATTTCCCATATTTCCGTT
ATGCTTTACACTTTGCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_m20.b1 MSMg01no492_m20.b1 CHROMAT_FILE:
MSMg01no492_m20.b1 PHD_FILE: MSMg01no492_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:07 2005
         (533 letters)



>mm_chr2_173573099_173574031
          Length = 933

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttgagcagagccttgaagaatgagcatacttcccaaagcagaggagggccctggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttgagcagagccttgaagaatgagcatacttcccaaagcagaggagggccctggttct 260

                                                                       
Query: 61  tcagtaatagggaaaccagactagaatccaccctaaccaaccagctacatgctgcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtaatagggaaaccagactagaatccaccctaaccaaccagctacatgctgcccttt 320

                                                                       
Query: 121 ttcccattggtgaaatgagaaagccagttgagcagagacacagaaggccagacatatctt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttcccattggtgaaatgagaaagccagttgagcagagatacagaaggccagacatatctt 380

                                                                       
Query: 181 ccatggtctgtgttgtctgtagctaagaggggcaactttggggaatcctgtatcttgaga 240
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 381 ccatggtctgtgttgtctgtagctaagtggggcaactttggggaatcctgtagcttgaga 440

                                                                       
Query: 241 gattaaaactaccatgagccattatttgtattgcagtagctgcaacctagagaagttggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattaaaactaccatgagccattatttgtattgcagtagctgcaacctagagaagttggg 500

                                                                       
Query: 301 gcccttgattagggtcactccagcccctaggctgggtgtctctcagctggctcctctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccttgattagggtcactccagcccctaggctgggtgtctctcagctggctcctctgtg 560

                                                                       
Query: 361 cacttagactgtgtttaggggaagtggcttgctctatatggtcacagtgaccatgaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttagactgtgtttaggggaagtggcttgctctatatggtcacagtgaccatgaattt 620

                                                                       
Query: 421 tggtcttttatgtagagaaaaattactaggtgtttgttagttgatggggtgaagaatatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtcttttatgtagagaaaaattactaggtgtttgttagttgatggggtgaagaatatg 680

                                                                
Query: 481 cacagaaaaacttgtcttttgaagatttttgggggatggatatataggattca 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagaaaaacttgtcttttgaagatttttgggggatggatatataggattca 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)