Query= MSMg01no493_c04.b1 MSMg01no493_c04.b1 CHROMAT_FILE:
MSMg01no493_c04.b1 PHD_FILE: MSMg01no493_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:34 2005
(607 letters)
>mm_chr2_72072743_72073750
Length = 1008
Score = 1137 bits (588), Expect = 0.0
Identities = 600/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgaaagttaagaatgtcttctagctttttaatagttaacatcaatatataaat 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaaagagaagaatgtcttctagctttttaatagttaacatcaatatataaat 264
Query: 65 taacatcttgtagtactgatgctggagtcaaaggggggg-tgtgttttgctctgaactct 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 taacatcttgtagtactgatgctggagtcaaaggggggggtgtgttttgctctgaactct 324
Query: 124 tcagatttcccccacccccacccccctttgaagaatgctattgaagtcaacaaaagttcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagatttcccccacccccacccccctttgaagaatgctattgaagtcaacaaaagttcc 384
Query: 184 tttagaaactttggttgcaaggctctggaagccgatgtggcacataacacattctcacca 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tttagaaactttggttgcaaggctctggaagccgatgtggcacataacacgttctcacca 444
Query: 244 gtagagggcagtagaacatgctggaacaacagctcacagctcaggcagaataaaatcagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagagggcagtagaacatgctggaacaacagctcacagctcaggcagaataaaatcagt 504
Query: 304 aaaacgcatacaggccagctaacctggcactaggaaatcatctccatgcacatcagagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaacgcatacaggccagctaacctggcactaggaaatcatctccatgcacatcagagaa 564
Query: 364 agcaaacatcttataaatattctatttaaaagcacttcttgggaaacaatttatttactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcaaacatcttataaatattctatttaaaagcacttcttgggaaacaatttatttactg 624
Query: 424 caggggccagttaggtttctccctgacatgaatttaatcttctcctgctatttagatatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caggggccagttaggtttctccctgacatgaatttaatcttctcctgctatttagatatg 684
Query: 484 cttgacaacctcctgtttacttccatgtttttggtatcaccacagtgctaaaaataaaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttgacaacctcctgtttacttccatgtttttggtatcaccacagtgctaaaaataaaaa 744
Query: 544 agctaaatgtggcttgtgctgcgagactccttccctttctaaatgcagagcccgagctcg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agctaaatgtggcttgtgctgcgagactccttccctttctaaatgcagagcccgagctcg 804
Query: 604 ggga 607
||||
Sbjct: 805 ggga 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_c04.g1 MSMg01no493_c04.g1 CHROMAT_FILE:
MSMg01no493_c04.g1 PHD_FILE: MSMg01no493_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:34 2005
(598 letters)
>mm_chr2_72257161_72258158
Length = 998
Score = 783 bits (405), Expect = 0.0
Identities = 438/467 (93%), Gaps = 28/467 (5%)
Strand = Plus / Minus
Query: 160 tttccacattaatgagtacatatttttgcttgttagtaattgaaataataaaataattga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tttccacattaatgagtacatatttttgcttgttagtaattgaaataataaaataattga 939
Query: 220 ataataaaaatggaaaatatttccttatttgaaatctctcttgacaagtctctctcaagg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ataataaaaatggaaaatatttccttatttgaaatctctcttgacaagtctctctcaagg 879
Query: 280 aagttatctctctctctctctctct----------------------------ctaccta 311
||||||||||||||||||||||||| |||||||
Sbjct: 878 aagttatctctctctctctctctctctctccctctctctctctctctctctacctaccta 819
Query: 312 cctacctacctacctacctataaatcataaaaagttactgtactgtggagaaagcttata 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cctacctacctacctacctataaatcataaaaagttactgtactgtggagaaagcttata 759
Query: 372 agcttataagcttgtcacagaattgaggctagattgtaacatacaccttgtttgctactg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agcttataagcttgtcacagaattgaggctagattgtaacatacaccttgtttgctactg 699
Query: 432 ggcagacttgagtgtggcagggttaaaacagggttctcactgttgctagtaagagaggaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggcagacttgagtgtggcagggttaaaacagggttctcactgttgctagtaagagaggaa 639
Query: 492 cttcatcttttgtccttattcttcttgtttctaacaagaatgagtgcctagtgaccaatg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cttcatcttttgtccttattcttcttgtttctaacaagaatgagtgcctagtgaccaatg 579
Query: 552 tacaggagaagctttcctttagtgctatgttattgccaaaatagagg 598
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 578 tacaggagaagctttcctttagtgctatgttatggccaaaatagagg 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
