Query= MSMg01no493_c15.b1 MSMg01no493_c15.b1 CHROMAT_FILE:
MSMg01no493_c15.b1 PHD_FILE: MSMg01no493_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:36 2005
(601 letters)
>mm_chr2_52381148_52382153
Length = 1006
Score = 1029 bits (532), Expect = 0.0
Identities = 580/608 (95%), Gaps = 21/608 (3%)
Strand = Plus / Minus
Query: 12 ttttttttttccaaattgaggtctctaggagaaaaaaatgataccaggttcattgccaat 71
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tttttttttt---aattgaggtctctaggagaaaaaaatgataccaggttcattgccaat 601
Query: 72 tccccataagggatttttagcaaatgtggtaaatgcagtagtgacgctggctctgtacac 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tccccataagggatttttagcaaatgtggtaaatgcagtagtgacgctggctctgtacac 541
Query: 132 acattgctttgtgcatgcatgtcaaacaccaaaagcccaagcaagcttccagtgagtcac 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acattgctttgtgcatgcatgtcaaacaccaaaagcccaagcaagcttccagtgagtcac 481
Query: 192 tgctcctgggttgagcttcagcgtgacctcacccacctctgcaacctcagccaaggaatg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgctcctgggttgagcttcagcgtgacctcacccacctctgcaacctcagccaaggaatg 421
Query: 252 agtcctcagta-----cttctctacgtctgcgtctccattgccctttcttctcccacccc 306
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 420 agtcctcagtacttctcttctctacgtctgcgtctccattgccctttcttctctcacccc 361
Query: 307 tgccggttgattttgtaagccagagactagtcagccaacaagtggacatttttataatgc 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cgccggttgattttgtaagccagagactagtcagccaacaagtggacatttttataatgc 301
Query: 367 tgaaagcgagctgagctctgtctccctgctgggttctgtaatgggcaggtgcctgtagaa 426
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 300 tgaaggcgagctgagctctgtctccctgttgggttctgtaatgggcaggtgcctgtagaa 241
Query: 427 agtgcttgctagtaggctca-------------gagctggcagtacctgctcccacagac 473
|||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct: 240 agtgcttgttagtaggctcagagcaggcaagtcgagctggcagtacctgctctcacagac 181
Query: 474 agacccctcccccaccagaagacctcacacatagcctttcctgaatcagagcatcttctc 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agacccctcccccgccagaagacctcacacatagcctttcctgaatcagagcatcttctc 121
Query: 534 agactgaatgagcttgcagcaagtatttccagaagtgcatttggcaggtgcatggacagt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agactgaatgagcttgcagcaagtatttccagaagtgcatttggcaggtgcatggacagt 61
Query: 594 ctcagggc 601
||||||||
Sbjct: 60 ctcagggc 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1006
Length adjustment: 10
Effective length of query: 591
Effective length of database: 996
Effective search space: 588636
Effective search space used: 588636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_c15.g1 MSMg01no493_c15.g1 CHROMAT_FILE:
MSMg01no493_c15.g1 PHD_FILE: MSMg01no493_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:36 2005
(658 letters)
>mm_chr2_52278265_52279322
Length = 1058
Score = 1224 bits (633), Expect = 0.0
Identities = 651/661 (98%), Gaps = 8/661 (1%)
Strand = Plus / Plus
Query: 1 cgtgaggctactgagctgggaagagaccatttaacgattttttttcttcacgatctcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgaggctactgagctgggaagagaccatttaacgattttttttcttcacgatctcact 260
Query: 61 ctattgactggtaatttcctaggaactggactctattaatcctcttgttaattttcaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattgactggtaatttcctaggaactggactctattaatcctcttgttaattttcaaac 320
Query: 121 tctgagtaaacgttcaggcaaatgctactacaaaatgcagagcacaagatctgtgctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgagtaaacgttcaggcaaatgctactacaaaatgcagagcacaagatctgtgctgct 380
Query: 181 accaatgcattcctgctatcatgtgcaactaggtgagtttcttttaaagttctaattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaatgcattcctgctatcatgtgcaactaggtgagtttcttttaaagttctaattcat 440
Query: 241 tttttatgtttttt----caacggtttggtcactgactcaaagaagaaagtgagaccagt 296
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttaagtt----acagcaacggtttggtcactgactcaaagaagaaagtgagaccagt 496
Query: 297 accagagacactttaaagcaaaaggtctttctaaaccaaagcagaactgaaacactagtc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accagagacactttaaagcaaaaggtctttctaaaccaaagcagaactgaaacactagtc 556
Query: 357 tcactaaattcaagactgtagaggacagaactagaataagaacacttattacccacacaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcactaaattcaagactgtagaggacagaactagaataagaacacttattacccacacaa 616
Query: 417 atatcaccagttctacaacaatgtaacctttagtacttcaaacctagagattaaatattc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atatcaccagttctacaacaatgtaacctttagtacttcaaacctagagattaaatattc 676
Query: 477 aaaaactgtagaccccacaaatccctcctgtgctaggtgagagtatctaaacccacagaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaaaactgtagaccccacaaatccctcctgtgctaggtgagagtatctaaacccacagaa 736
Query: 537 ttatgaagccactagaaaccactaccccgtcacacgttctctgctgaccagacagagcta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttatgaagccactagaaaccactaccccgtcacacgttctctgctgaccagacagagcta 796
Query: 597 atggaaatatcctctttattgccttccacttcatttagtaccattatcttaggtatcatt 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 797 atggaaatatcctctttattgccttccacttcatttagtaccgttatcttaggtatcatt 856
Query: 657 t 657
|
Sbjct: 857 t 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
