Query= MSMg01no493_i06.b1 MSMg01no493_i06.b1 CHROMAT_FILE:
MSMg01no493_i06.b1 PHD_FILE: MSMg01no493_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:05 2005
(577 letters)
>mm_chr2_34258249_34259224
Length = 976
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Plus
Query: 13 tcactctctattgccgaagtcaggcttaattgctaatactatacaatgctgaccgagtct 72
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcactctctagtgccgaagtcaggcttaattgctaatactatacaatgctgaccgagtct 272
Query: 73 tgtaataccagcaactgttctttgttatccacaggtcagctctgtccacgtgagtgacat 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgtaataccagcaactgttctttgttatccacaggtcagctctgtccacgtgagtgacat 332
Query: 133 tcagtcatttaatccacccagtgcaatgagcttatttaagacttttgtcaagcccttaaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 333 tcagtcatttaatccacccagtgcaatgagcttatttaagacttttgtcaagccctt-aa 391
Query: 193 aaaaaatagttcttttcatgtgtatgtgcaagtgcctgaatgtataatgttttctctgtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaaaaatagttcttttcatgtgtatgtgcaagtgcctgaatgtataatgttttctctgtg 451
Query: 253 tatatgcctggtgcccacagagaccagagtagacatcagagttgcgggtgggtgcaagct 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatatgcctggtgcccacagagaccagagtagacatcagagttgcgggtgggtgcaagct 511
Query: 313 gcctgacgtggatgcgggggaaccaaggccaggcctactacaagtgcttttagccacgga 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 512 gcctgacgtggatgcgggggaaccaaggccaggcctactacaagtgcttttagccacaga 571
Query: 373 gccatctctcttgtgcctggcttttccattgtaggagtaaagacctgtgaaaaggagggg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gccatctctcttgtgcctggcttttccattgtaggagtaaagacctgtgaaaaggagggg 631
Query: 433 cagcttaaggtggtgactcacaggaccattgcgtggcagagtggggatttgatctttaga 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cagcttaaggtggtgactcacaggaccattgcgtggcagagtggggatttgatctttaga 691
Query: 493 acctacacacgcttggcagtccagttggtttcagttttacctggttttatgtgtctgaga 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 acctacacacgcttggcagtccagttggtttcagttttacctggttttatgtgtctgaga 751
Query: 553 gacaatttgacagttgggttttaga 577
|||||||||||||||||||||||||
Sbjct: 752 gacaatttgacagttgggttttaga 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space: 547722
Effective search space used: 547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_i06.g1 MSMg01no493_i06.g1 CHROMAT_FILE:
MSMg01no493_i06.g1 PHD_FILE: MSMg01no493_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:05 2005
(607 letters)
>mm_chr2_34454318_34455323
Length = 1006
Score = 1118 bits (578), Expect = 0.0
Identities = 599/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 2 gccctgtgaggcctgaatgatcagtagttttccatgtcagtgaaggctgtgtgggggaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gccctgtgaggcctgaatgatcagtagttttccatgtcagtgaaggctgtgtgggggaat 947
Query: 62 cagaacttgatttattatacttgtgtgtatcagcttgagcatttgtgtggatggaggcca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cagaacttgatttattatacttgtgtgtatcagcttgagcatttgtgtggatggaggcca 887
Query: 122 gaagaaggtgtcaaatgacctccaatattattctctgcctatcactttgaggcaaggcct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaagaaggtgtcaaatgacctccaatattattctctgcctatcactttgaggcaaggcct 827
Query: 182 ctccctgaatctgcagttcatttttctcttagctgggttccttccctgactggagcaggg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ctccctgaatctgcagttcatttttctcttagctgggttccttccctgactggagcaggg 767
Query: 242 gttatgggcatgcatggaatagaatgctttcttttttatttttttaaaagcaaaaaactc 301
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 766 gttataggcatgcatggaatagaatgctttctttttta-ttttttaaaagcaaaaaactc 708
Query: 302 caaaagcaaagttttacctgtgaacttcttaatttttggctcccaaatagcatccccacg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 caaaagcaaagttttacctgtgaacttcttaatttttggctcccaaatagcatccccacg 648
Query: 362 gccagcacctgtgtcctttagtccctgtacatgtaacctctgagttcagagaatatggct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gccagcacctgtgtcctttagtccctgtacatgtaacctctgagttcagagaatatggct 588
Query: 422 tgaaaagccctgctagagaacagggcagggggctgtcctcctcagcaacagacagtcaag 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgaaaagccctgctagagtacagggcagggggctgtcctcctcagcaacagacagtcaag 528
Query: 482 gacagtcccctctccctcaagggcttggcacctggtttgcacactgggactgtggagaga 541
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 527 gacagtcccctctccctcaagggcttggcacctggtttgcacactgggaccgtggagaga 468
Query: 542 aagtcaacattgagaagatggccctgtctgttctgtactctgaagcagagcatgtggctg 601
|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 467 aagtcaacattgagaagatggccctgcctgttctgaactctgaagctgagcatgtggctg 408
Query: 602 ggccat 607
||||||
Sbjct: 407 ggccat 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
