BAC Information

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BAC

Clone NameMSMg01-493L13
Chromosome2 (Build37)
Map Location 172,823,810 - 172,824,159
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11
Downstream geneRae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493L13.T7 (MSMg01no493_l13.b1)MSMg01-493L13.TJ (MSMg01no493_l13.g1)
ACCAG571171AG571172
length727732
length of high quality
(start - end)		651 (77 - 727)615 (74 - 688)
definitionCHROMAT_FILE: MSMg01no493_l13.b1 PHD_FILE: MSMg01no493_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:22 2005CHROMAT_FILE: MSMg01no493_l13.g1 PHD_FILE: MSMg01no493_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGAGGGCNG
GAATCTTAGAGGTTTCGAAAAAAAGACAAACCATTGATTTAAAAATGAAC
TCAAACTGACACATTTCCTAAAGAGATGGCGCCATCAATTGTTAGGGAAA
TACAAGTTACACATGCATACATACAGACTCACACATGCACATAGACATAC
ACAGGCACACATAAACATGCACAGACACATGTACACACATGCGCAGACAC
ACTCATATGCATGCACATGGCACATATACCCACATGCACACACAGACACA
TATTCATAAACATATATACTATTATTCAGACACATGCACACATATACACA
TGTATATACACAAACACACATACATGCACATGCATGAACACACACACAGA
GGCACATGCACACACACACACACACACGTATACACAGGTACATGCATACA
TATGCACACACATACATACATGCACACATACACACACATACATACATGTA
CACATACACGCATGCACACACATACATACATGCACACATACACACATGCA
TACACATACATACATGCACACATACACACATGCATACACATACATACATG
CACACATACACACATGCACACACATACATACATGCATACATACACACATA
TACATGCACACATACATACACACATACACACACAGGCACATGCACACACA
TACATATGCACATATATGCACACATGG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAACTAGCCAGCACAGCACACCCTT
AGTGAGGGCAGCTGACAGTGACCAAAGAGGCTTTACACTAACGGCCACAA
CCATCAAGCAGCAAACAGCACAGTTCCCTTTAGAGCCATGGCCCTTGCAG
CACTGCATTATAGTCCTGTGGGGTGTGCTGGATAGTTTTATGCCAACTTG
ACACAAGCTAAAGTCATCTGAGAGGAGGGAACCTCAGTTAAGAAAATGCC
TCCATAAGATTAGGCTGTGCGCAAGACAGTAAAGCAATTCCTTAATTAGT
GATCAGTGGTGGAGGGCCCAACCCATGGTGGATGGGGCCATCCCTGGGTT
CTATAAGAAAGCAGGCTGAGCAAGCCACAGAAAGCAAGCCAGTAAGCAGC
ATCCCACCATGGCCTCTGCATCAGCTCCTGCTCCAGGTTCCTGCCCTGAC
TTCCTTTGCTAATGACCTGTGATGTAGACGCCTAAGCAGAATAAACCCTT
TCCTCCCCAGCGTGCTTTGCTTATGGTGTTAATCACGGCAGTGGCAACTG
TAACTAAGACAGGTGGTGTTGCAGCCTATGCAGCCAGCTTCAGATAGTTA
TCAACCTCGCAGGCCACGGGGAGATCATGTCGGGCAGAAAGGTCATCTTC
CCCCCCCCCCAGCTTTAGCATTCATTACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_l13.g1 MSMg01no493_l13.g1 CHROMAT_FILE:
MSMg01no493_l13.g1 PHD_FILE: MSMg01no493_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:22 2005
         (615 letters)



>mm_chr2_172823810_172824824
          Length = 1015

 Score =  646 bits (334), Expect = 0.0
 Identities = 346/350 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaactagccagcacagcacacccttagtgagggcagctgacagtgaccaaagaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 attaactagccagcacagcacacccttagtgagggcagctgacagtgaccaaagaggctt 291

                                                                       
Query: 61  tacactaacggccacaaccatcaagcagcaaacagcacagttccctttagagccatggcc 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 290 tacagtaacggccacaaccatcaagcagcaaacagcacagttccctttagggccatggcc 231

                                                                       
Query: 121 cttgcagcactgcattatagtcctgtggggtgtgctggatagttttatgccaacttgaca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 230 cttgcagcactgcattatagtcctgcggggtgtgctggatagttttatgccaacttgaca 171

                                                                       
Query: 181 caagctaaagtcatctgagaggagggaacctcagttaagaaaatgcctccataagattag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 caagctaaagtcatctgacaggagggaacctcagttaagaaaatgcctccataagattag 111

                                                                       
Query: 241 gctgtgcgcaagacagtaaagcaattccttaattagtgatcagtggtggagggcccaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gctgtgcgcaagacagtaaagcaattccttaattagtgatcagtggtggagggcccaacc 51

                                                             
Query: 301 catggtggatggggccatccctgggttctataagaaagcaggctgagcaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  catggtggatggggccatccctgggttctataagaaagcaggctgagcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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