BAC Information

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BAC

Clone NameMSMg01-493N01
Chromosome2 (Build37)
Map Location 119,461,908 - 119,512,849
singlet/doubletdoublet
Overlap geneNusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1
Upstream geneBub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493N01.T7 (MSMg01no493_n01.b1)MSMg01-493N01.TJ (MSMg01no493_n01.g1)
ACCAG571243AG571244
length740753
length of high quality
(start - end)		695 (46 - 740)673 (74 - 746)
definitionCHROMAT_FILE: MSMg01no493_n01.b1 PHD_FILE: MSMg01no493_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:29 2005CHROMAT_FILE: MSMg01no493_n01.g1 PHD_FILE: MSMg01no493_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,461,908 - 119,462,598)(119,512,177 - 119,512,849)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTCTTACACTGAACTGCTTGTTTGTTGTTTTGTTTTGTTTTT
CTGTTTTTTTTTTTGTTTGTTTGTTTTGTTTTTGTTTTTTTTTGGTTTCT
CTGTATATCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT
CAAACTCAGAAATCTGCCTACCTCTGCCTCCTAAGAGCTGGGATTAAAGC
CATGTTCCACCATGCCAGGCTTGTCCTTTTTGTTTTGTAATCCAGAGTGT
CCTTGGATCGTCAGTGACTCTCAGGGTCCCAAGTACTAGGATTTTAGGCA
TGAGCTGCCACACTTAGCAAAGTTTCAATTTTTAAATAATTTAACAATAT
GGAGAATATAGATATCATCAAATGACTATATATGTAAATGGACCTATTTG
GGTTTTGGCACATCTTTCTTAAAATTGCTTCCTTCTGCCATCAGAATTTT
TAAAACTCCGTAAAAACTGTATCCTGCCATATTGTGGCACTTGCCTTTAA
CCCAGTCCTTAGAGAGCAGTGGCAGGCACATGAGTTTGAGGCTAGCATGG
GCTATATGGGGAATTTCAGGTTAGCCAGTGCTATAGAGTGAGACTGTTAG
GGTCCAAGAATCACTAGAGAATGATACCCCAGACTCAAAGAGTATGCAAA
AGCAAAGAGCGTATATTCAGTTGAATTTTCTGGTCTCCCC

TTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTTTTAACATCAACTCATTACAACA
GGAATTTGGATACATTTTTGCTGTGGTCTGAAAGTGCTTTGTTTCTCTGA
ACTCTTGCAGCAGTTTGTTTCAATTCTGAAACAGACTCTCACTATCTGGC
CCTGGTTGGCCTGAAACTCACAGAGATTTGCCTACCAAGTGCTAGGACTA
TGCATGTGGCACAACATCCAGCTTCTTGCAGTAATTTAACCCAAAGAGAT
TTACTTTTTGGTATTCAGAGGAAAGGAATCTGATTTGGCTATGATATGCA
TAAGTGGGGCTTTGGGAAGCTACAACCTCATGACTGAATCCTGACAGCTT
TGTAAGCAGACAGACAAATTGTTATTCATGTGTCTTACCATGATGTGATA
CAGCTGGAGTCTGTACCATGCTGTTGCCCTCCGGCCTCCAAAACTGTGAG
CTGAGTACCCCTTTCTCCCTAAGAAGTAATCTAATTCATTACAAGAATGA
ACTTTTAACTGTAGCTGGCAACTAAGTCCTACCCTGAAAAAGTAGCTATT
ACCTTCAGTAGATTCATTAAAACTACTGAAATCGGGTAAGCAGGATGGCT
CAGCAGGTAAAAGGAACCAGGCACTGAGCCTGAAACCACATTCAATCGCC
AGAACTATATGATGAAAGGACAGAACCAACTACCTCAAGTTGACCTCCGA
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_n01.b1 MSMg01no493_n01.b1 CHROMAT_FILE:
MSMg01no493_n01.b1 PHD_FILE: MSMg01no493_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:29 2005
         (695 letters)



>mm_chr2_119461704_119462798
          Length = 1095

 Score = 1328 bits (687), Expect = 0.0
 Identities = 690/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttcttacactgaactgcttgtttgttgttttgttttgtttttctgtttttt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttcttagactgaactgcttgtttgttgttttgttttgtttttctgtttttt 264

                                                                       
Query: 65  tttttgtttgtttgttttgtttttgtttttttttggtttctctgtatatccctggctgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttgtttgtttgttttgtttttgtttttttttggtttctctgtatatccctggctgtc 324

                                                                       
Query: 125 ctggaactcactttgtagaccaggctggcctcaaactcagaaatctgcctacctctgcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggaactcactttgtagaccaggctggcctcaaactcagaaatctgcctacctctgcct 384

                                                                       
Query: 185 cctaagagctgggattaaagccatgttccaccatgccaggcttgtcctttttgttttgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctaagagctgggattaaagccatgttccaccatgccaggcttgtcctttttgttttgta 444

                                                                       
Query: 245 atccagagtgtccttggatcgtcagtgactctcagggtcccaagtactaggattttaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccagagtgtccttggatcgtcagtgactctcagggtcccaagtactaggattttaggc 504

                                                                       
Query: 305 atgagctgccacacttagcaaagtttcaatttttaaataatttaacaatatggagaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgagctgccacacttagcaaagtttcaatttttaaataatttaacaatatggagaatat 564

                                                                       
Query: 365 agatatcatcaaatgactatatatgtaaatggacctatttgggttttggcacatctttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatatcatcaaatgactatatatgtaaatggacctatttgggttttggcacatctttct 624

                                                                       
Query: 425 taaaattgcttccttctgccatcagaatttttaaaactccgtaaaaactgtatcctgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaattgcttccttctgccatcagaatttttaaaactccgtaaaaactgtatcctgcca 684

                                                                       
Query: 485 tattgtggcacttgcctttaacccagtccttagagagcagtggcaggcacatgagtttga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattgtggcacttgcctttaacccagtccttagagagcagtggcaggcacatgagtttga 744

                                                                       
Query: 545 ggctagcatgggctatatggggaatttcaggttagccagtgctatagagtgagactgtta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggctagcatgggctatatggggaatttcaggttagccagtgctatagagtgagactgtta 804

                                                                       
Query: 605 gggtccaagaatcactagagaatgataccccagactcaaagagtatgcaaaagcaaagag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gggtccaagaatcactagagaatgataccccagactcaaagagtatgcaaaagcaaagag 864

                                          
Query: 665 cgtatattcagttgaattttctggtctcccc 695
           |||||||||||||||||||||||||||||||
Sbjct: 865 cgtatattcagttgaattttctggtctcccc 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_n01.g1 MSMg01no493_n01.g1 CHROMAT_FILE:
MSMg01no493_n01.g1 PHD_FILE: MSMg01no493_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:29 2005
         (673 letters)



>mm_chr2_119511890_119512962
          Length = 1073

 Score = 1301 bits (673), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttttaacatcaactcattacaacaggaatttggatacatttttgctgtggtctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 cagttttaacatcaactcattacaacaggaatttggatacatttttgctgtggtctgaaa 901

                                                                       
Query: 61  gtgctttgtttctctgaactcttgcagcagtttgtttcaattctgaaacagactctcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gtgctttgtttctctgaactcttgcagcagtttgtttcaattctgaaacagactctcact 841

                                                                       
Query: 121 atctggccctggttggcctgaaactcacagagatttgcctaccaagtgctaggactatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 atctggccctggttggcctgaaactcacagagatttgcctaccaagtgctaggactatgc 781

                                                                       
Query: 181 atgtggcacaacatccagcttcttgcagtaatttaacccaaagagatttactttttggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 atgtggcacaacatccagcttcttgcagtaatttaacccaaagagatttactttttggta 721

                                                                       
Query: 241 ttcagaggaaaggaatctgatttggctatgatatgcataagtggggctttgggaagctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttcagaggaaaggaatctgatttggctatgatatgcataagtggggctttgggaagctac 661

                                                                       
Query: 301 aacctcatgactgaatcctgacagctttgtaagcagacagacaaattgttattcatgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aacctcatgactgaatcctgacagctttgtaagcagacagacaaattgttattcatgtgt 601

                                                                       
Query: 361 cttaccatgatgtgatacagctggagtctgtaccatgctgttgccctccggcctccaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cttaccatgatgtgatacagctggagtctgtaccatgctgttgccctccggcctccaaaa 541

                                                                       
Query: 421 ctgtgagctgagtacccctttctccctaagaagtaatctaattcattacaagaatgaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctgtgagctgagtacccctttctccctaagaagtaatctaattcattacaagaatgaact 481

                                                                       
Query: 481 tttaactgtagctggcaactaagtcctaccctgaaaaagtagctattaccttcagtagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttaactgtagctggcaactaagtcctaccctgaaaaagtagctattaccttcagtagat 421

                                                                       
Query: 541 tcattaaaactactgaaatcgggtaagcaggatggctcagcaggtaaaaggaaccaggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcattaaaactactgaaatcgggtaagcaggatggctcagcaggtaaaaggaaccaggca 361

                                                                       
Query: 601 ctgagcctgaaaccacattcaatcgccagaactatatgatgaaaggacagaaccaactac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgagcctgaaaccacattcaatcgccagaactatatgatgaaaggacagaaccaactac 301

                        
Query: 661 ctcaagttgacct 673
           |||||||||||||
Sbjct: 300 ctcaagttgacct 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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