BAC Information

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BAC

Clone NameMSMg01-493P13
Chromosome2 (Build37)
Map Location 14,806,079 - 14,930,018
singlet/doubletdoublet
Overlap geneCacnb2, LOC100041220, Nsun6
Upstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335, LOC625342
Downstream geneArl5b, LOC633061, LOC667329, LOC227588, LOC625457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493P13.T7 (MSMg01no493_p13.b1)MSMg01-493P13.TJ (MSMg01no493_p13.g1)
ACCAG571362AG571363
length728736
length of high quality
(start - end)
630 (47 - 676)661 (73 - 733)
definitionCHROMAT_FILE: MSMg01no493_p13.b1 PHD_FILE: MSMg01no493_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:41 2005CHROMAT_FILE: MSMg01no493_p13.g1 PHD_FILE: MSMg01no493_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,806,079 - 14,806,704)(14,929,427 - 14,930,018)
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTGATTCTGCCTCACCGGCGATGGAGTTACAGGTACAGCCAG
CTTTCTATACAGGGTAGAGGACCTGAAGTCACATGTTGATGCTTGTGAGG
CAATGATGTTACCTGCTGAGCCACCAATAGGTAACAATTACTGCTTGTGC
TAATTTAGAGTCTCTGTCAAATTTTCCACTGAATAACTAACCTGCCTCAG
TCCATGTAACTCTTCCATAGGAGAAAAATGGGAATCTAGAGCAATCCCAT
GCTATCAATGAAGAAAGTATGAGATTGAACAATGTCATCCAAGGTCATTG
AGGTCCTAACTGGCAAAATTATTGTAAAAGCTCAGCTTCTGTGCCTAAGT
TCTTTTACCTAACCAGTCACCCCACTCCTTCTTAGAAACACTTTGATCTT
TAACTATGAACTTCAAAATAAAACAGAGCAAACATCAAAATCATTTTAAA
GGTCTAACTAATACCTATGCCTTTTTCTATTGAGTGTAGGTAGGACTAAT
GGAGTTCACAGGCAGAATACTTACTGCACTTTCCCTGCATTTTATGATTT
GACTAACATCTATGTGATGGACTTGAAGTTCGTCTTCACTCTGTAAAAGC
TAAGTGTGTGTGTGCACACATGTGAGGGACAAAGATGGCTGTACATACAT
ATGTGCCTGGGTGCATGTGTGGAGGTCN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGTTTTGTTAAACTTAGATTTCAAAGC
AAGAAGTACTTCTATTTTATTTTAAATTCAATTTTCCTATTTATAAAAAA
TTTATGAAGAAATGATGTCCAGGTTTATTTTTACTGGTCTGTATATGCAC
CACCTGCATGCAGGAGTCTGCATAAGCCTGAAGAAGGCCTCTGTAACTGG
AGTCAGAGGTGATGGATGGGTGCTGAGAACTGAACCTGAGTCCTGTGCGA
GAGCAGTAAGCACTCAACTGGGGAGCCACCTTTTCAGGCCCAGTACAATG
ATCTTTTGGTGATAAATGGGTTCATCATTTCTTCCCTTTCCTCCAATGAG
AATATATAAACAGCAACAATTAATGTGCTGTAATCACTCAGTCTCTAAGG
TTGTCTTTGAGGACATTTCTGCGCATTATCTCTTGCTGCCTCGTTTCATA
CACAAAGGCAGCATGGGCTGTGTATTATTTAAGTACTTCCAGAATCATCA
TCAAAGAACATGCATTTGTCATGAAAGCACCAAGTGGCACAAAGGACTCT
TTCCAGATGAAATACACTTTGCCCTGAGGATAAAATTAATTTACTGCTTT
ATTGCTTTTTCCTTCTGTCGTTGTTTTTAGGTCACAGTGAAAATTGAAAT
TCAGAAAGGATACTGAGAGTAGATAGATGATTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_p13.b1 MSMg01no493_p13.b1 CHROMAT_FILE:
MSMg01no493_p13.b1 PHD_FILE: MSMg01no493_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:41 2005
         (630 letters)



>mm_chr2_14805875_14806904
          Length = 1030

 Score = 1141 bits (590), Expect = 0.0
 Identities = 617/626 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctgattctgcctcaccggcgatggagttacaggtacagccagctttctatac 64
           ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||  |
Sbjct: 205 gaattcttctgtttctgcctcaccatcgatggagttacaggtacagccagctttctaccc 264

                                                                       
Query: 65  agggtagaggacctgaagtcacatgttgatgcttgtgaggcaatgatgttacctgctgag 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggtagagaacctgaagtcacatgttgatgcttgtgaggcaatgatgttacctgctgag 324

                                                                       
Query: 125 ccaccaataggtaacaattactgcttgtgctaatttagagtctctgtcaaattttccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaccaataggtaacaattactgcttgtgctaatttagagtctctgtcaaattttccact 384

                                                                       
Query: 185 gaataactaacctgcctcagtccatgtaactcttccataggagaaaaatgggaatctaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaataactaacctgcctcagtccatgtaactcttccataggagaaaaatgggaatctaga 444

                                                                       
Query: 245 gcaatcccatgctatcaatgaagaaagtatgagattgaacaatgtcatccaaggtcattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaatcccatgctatcaatgaagaaagtatgagattgaacaatgtcatccaaggtcattg 504

                                                                       
Query: 305 aggtcctaactggcaaaattattgtaaaagctcagcttctgtgcctaagttcttttacct 364
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctcctaactggcaaaattattgtaaaagctcagcttctgtgcctaagttcttttacct 564

                                                                       
Query: 365 aaccagtcaccccactccttcttagaaacactttgatctttaactatgaacttcaaaata 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 aaccagtcaccccactccttcttagaaacactttgttctttaactatgaacttcaaaata 624

                                                                       
Query: 425 aaacagagcaaacatcaaaatcattttaaaggtctaactaatacctatgcctttttctat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaacagagcaaacatcaaaatcattttaaaggtctaactaatacctatgcctttttctat 684

                                                                       
Query: 485 tgagtgtaggtaggactaatggagttcacaggcagaatacttactgcactttccctgcat 544
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 tgagtgtaggtaggactaatggagttcacaggcaaaatacttactgcactttccctgcat 744

                                                                       
Query: 545 tttatgatttgactaacatctatgtgatggacttgaagttcgtcttcactctgtaaaagc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttatgatttgactaacatctatgtgatggacttgaagttcgtcttcactctgtaaaagc 804

                                     
Query: 605 taagtgtgtgtgtgcacacatgtgag 630
           ||||||||||||||||||||||||||
Sbjct: 805 taagtgtgtgtgtgcacacatgtgag 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no493_p13.g1 MSMg01no493_p13.g1 CHROMAT_FILE:
MSMg01no493_p13.g1 PHD_FILE: MSMg01no493_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:42 2005
         (661 letters)



>mm_chr2_14928958_14930018
          Length = 1061

 Score = 1122 bits (580), Expect = 0.0
 Identities = 589/592 (99%)
 Strand = Plus / Minus

                                                                        
Query: 70   tataaaaaatttatgaagaaatgatgtccaggtttatttttactggtctgtatatgcacc 129
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1061 tataaaaaatttatgaagaaatgatgtccaggtttatgtttactggtctgtatatgcacc 1002

                                                                        
Query: 130  acctgcatgcaggagtctgcataagcctgaagaaggcctctgtaactggagtcagaggtg 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 acctgcatgcaggagtctgcataagcctgaagaaggcctctgtaactggagtcagaggtg 942

                                                                        
Query: 190  atggatgggtgctgagaactgaacctgagtcctgtgcgagagcagtaagcactcaactgg 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  atggatgggtgctgagaactgaacctgagtcctgtgcgagagcagtaagcactcaactgg 882

                                                                        
Query: 250  ggagccaccttttcaggcccagtacaatgatcttttggtgataaatgggttcatcatttc 309
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 881  ggagccaccttttcaggcccagtacaatgatcttttggtgataaatggattcatcatttc 822

                                                                        
Query: 310  ttccctttcctccaatgagaatatataaacagcaacaattaatgtgctgtaatcactcag 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821  ttccctttcctccaatgagaatatataaacagcaacaattaatgtgctgtaatcactcag 762

                                                                        
Query: 370  tctctaaggttgtctttgaggacatttctgcgcattatctcttgctgcctcgtttcatac 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 761  tctctaaggttgtctttgaggacatttctgcgcattatctcttgctgcctcctttcatac 702

                                                                        
Query: 430  acaaaggcagcatgggctgtgtattatttaagtacttccagaatcatcatcaaagaacat 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  acaaaggcagcatgggctgtgtattatttaagtacttccagaatcatcatcaaagaacat 642

                                                                        
Query: 490  gcatttgtcatgaaagcaccaagtggcacaaaggactctttccagatgaaatacactttg 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641  gcatttgtcatgaaagcaccaagtggcacaaaggactctttccagatgaaatacactttg 582

                                                                        
Query: 550  ccctgaggataaaattaatttactgctttattgctttttccttctgtcgttgtttttagg 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581  ccctgaggataaaattaatttactgctttattgctttttccttctgtcgttgtttttagg 522

                                                                
Query: 610  tcacagtgaaaattgaaattcagaaaggatactgagagtagatagatgattt 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521  tcacagtgaaaattgaaattcagaaaggatactgagagtagatagatgattt 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)