BAC Information

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BAC

Clone NameMSMg01-494J23
Chromosome2 (Build37)
Map Location 138,072,557 - 138,072,929
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494J23.T7 (MSMg01no494_j23.b1)MSMg01-494J23.TJ (MSMg01no494_j23.g1)
ACCAG571858AG571859
length813760
length of high quality
(start - end)
117 (68 - 184)610 (60 - 669)
definitionCHROMAT_FILE: MSMg01no494_j23.b1 PHD_FILE: MSMg01no494_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:30 2005CHROMAT_FILE: MSMg01no494_j23.g1 PHD_FILE: MSMg01no494_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXTGCCGTATTGCNNCGNATTCCTTCC
GGTCNCCCTTCCTTGCTTCCTTCCTTCCTTACTTACTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTTCTTCTTTCGTTCTTTCCTTCCTTTGGTGGTTAT
AGTAATAGTGGTGGTGGTGGTGATGGTGGTGGNGGNGGGGTTGAGGTGTT
TGTGTGTAGTGGGTTGGTGAGGGGGGGTTTGGGGGGGGTTTTGTTGGATG
GTGAGTTGTTGGTTGGGTTGGTGGTGGTGTTAGGGTGTGGGGTGAGGAGG
AAGTTTTTTTTTTTAGTGTGGGTGGNTTAGAGTGGTGGATGGTTGAGTTT
TTTTTTTTGGGTGTTTGGGGCGGAGGGGGGGTGTCATTTTTCGGGCAGTT
GGGGGAATATACCCTCTATTTATTTCCTATTGTACCTGGGTGGAATTTCA
GGGTGGTAGTGTAGATATCGTTGTTTGGACGAGGGTTTTTGGTTAATTTC
TTGTGAATGCTTGATTAGCGAAGCGCCCGGCGGGTTTTTTTTCGTTTTGT
ATTTCGTTAAGTGCTGCGGTAAAATGCGATAGGTAATTGTATGTAGTTAT
GCTTTTCATATTTTAAGGCGCGTTCGTTTAACGCAAGGAAGAGTGTTTGT
TGATTTTTTATTTGTTTTGCGATATGGGGGTTTTTCGCTCCTTTATGTGT
GTTCTGATTTGATTTTCTCGTGTTCCTAGCGCCTTTATTCAGAGTTTGTT
ATGTGGTGTCAAGAATGCGCGGTGCTGGTGGGTTTGACCATGGGGTGTTC
GATTTTTTTACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAAAAAGCCTATAAATGCTGTACGCTTTGTCAAAATTCTTGT
CTTAGTCAGGGTTTCTATTCCTGGGCAAAACATCGTGACCAAGAAGAAAG
TTGGGGAGGAAAAGGTTTATTCAGCTTACAATTCCACACACCTGTCCATC
ACCCAGGAAGTCAGGACTGTAACCTAAGCAGGTCAGGAAGCAGGAGCTGA
TGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTG
CTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCC
CACCCACAAGGGGCCCTTTCCCCTTGATCACTAATTGAGAAAATACCCCA
CAGTTGGAGCTTATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTCTGTG
ATAACCCCAGCCTGTGTCAAGTTGACACATAAAACCAGCCAGTACAATTC
TGAACCTGATTTCAAAAAATTAAATATATGTTCATTTGCATATGCTAATG
ACAACACGATTTTCCTGGCTGTTTTTGGGCTGGAACCTTTGTTTTTCTCC
GAACTTCTTTGGAATTGATAGATTGGATTGATTCATTATGTAAAACCGTT
TTTTGTTGTGTTTTGAGGCAGATATACACAGATCCAAGCATTACAGTAGA
AGACATTGTGTTTTACCAATTGGCAACATGACTAAGCTTTGGTTTAAGAC
TGAAGAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_j23.g1 MSMg01no494_j23.g1 CHROMAT_FILE:
MSMg01no494_j23.g1 PHD_FILE: MSMg01no494_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:30 2005
         (610 letters)



>mm_chr2_138071920_138072929
          Length = 1010

 Score =  714 bits (369), Expect = 0.0
 Identities = 372/373 (99%)
 Strand = Plus / Minus

                                                                        
Query: 238  cttgctcagcctgctctcttatagaacccaagactaccagcccagagatggtcccaccca 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 cttgctcagcctgctctcttatagaacccaagactaccagcccagagatggtcccaccca 951

                                                                        
Query: 298  caaggggccctttccccttgatcactaattgagaaaataccccacagttggagcttatgg 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  caaggggccctttccccttgatcactaattgagaaaataccccacagttggagcttatgg 891

                                                                        
Query: 358  aggcatttccccaactgaagctcctttctctgtgataaccccagcctgtgtcaagttgac 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  aggcatttccccaactgaagctcctttctctgtgataaccccagcctgtgtcaagttgac 831

                                                                        
Query: 418  acataaaaccagccagtacaattctgaacctgatttcaaaaaattaaatatatgttcatt 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  acataaaaccagccagtacaattctgaacctgatttcaaaaaattaaatatatgttcatt 771

                                                                        
Query: 478  tgcatatgctaatgacaacacgattttcctggctgtttttgggctggaacctttgttttt 537
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 770  tgcatatgctaatgacaacacgattttcctgactgtttttgggctggaacctttgttttt 711

                                                                        
Query: 538  ctccgaacttctttggaattgatagattggattgattcattatgtaaaaccgttttttgt 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ctccgaacttctttggaattgatagattggattgattcattatgtaaaaccgttttttgt 651

                         
Query: 598  tgtgttttgaggc 610
            |||||||||||||
Sbjct: 650  tgtgttttgaggc 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)