BAC Information

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BAC

Clone NameMSMg01-494K22
Chromosome2 (Build37)
Map Location 126,709,263 - 126,709,837
singlet/doubletsinglet
Overlap genenone
Upstream geneGalk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7
Downstream gene2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494K22.T7 (MSMg01no494_k22.b1)MSMg01-494K22.TJ (MSMg01no494_k22.g1)
ACCAG571904AG571905
length764765
length of high quality
(start - end)		580 (30 - 609)597 (60 - 656)
definitionCHROMAT_FILE: MSMg01no494_k22.b1 PHD_FILE: MSMg01no494_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:34 2005CHROMAT_FILE: MSMg01no494_k22.g1 PHD_FILE: MSMg01no494_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATAGTTCGAGGATCCGCGGAATTCTGTGCTACTT
TCGTGGGAGTGTTCTTGCCTCTTCCTGTGAGTCACAAGGTGGCTCTGAGA
ATAAAATAAATAAAAAAGACACCAGCTTACCCCACCCCCAAGGAGCAGAC
CTGGCAGTGGTTGGGAGACCTCAGGTGAGTTTCATTAATACCCAAGGTGT
AGTAACAATGGACTGGGGTGAACTATAAGAAAAAAGAACTTCAAGGTAGA
GAGAGGTTTCTGGCCATGAAGCCCTCCTGTTAATAAATTTTGGCTTCATA
GAATTAGCAACCAAATTGCAAGTGGAATGCAAGATTATTTGAAATTTAAT
GGTGAAAACACATGCTCTTCCAATGATCTTTTATTGAGCTGAGAGCCTTG
CCTACCCTGAAGCTTTCACAGCTATAAACTGAGGTGACTGTCCTTGCCTG
TTGTCTTGGAGTGGCATCTAAACTCAGGCCCTCAAGCTGGATCAGCAAGC
ACTATATTTGCTGAGCTATCTACTCAACTTCCAGAGGCTTACTTTCAGTG
CTAGTAAAAGCAAGAAGGTAAAAATGATTTAAAGACAAGAGACTCCTGTC
TTTGTGTGGCATATCTAGCATTCATTATATGGTTTCTCCTGGTCCTCTGA
TTACTCAACATTAGCTCAGTAAGTCCCTGTGCATCTATGAGCCTGGTGAT
ATCACTAACCTTATTGAACACAGAGGAATTGTATAGAGTGCAGACACCTA
CTATATTACCTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGATTTGATTCAAATAATCTTAAGAAAAAAGTTTGAGGAC
ATGGTTTTGTTTTGCCGGAAAGAGGTAATAAAGTTAGATCAAGAATAGAA
TGTTTCCATTCCTCATAGAATAGTACGAATAGGCTGCATAATAAGGAATA
CAGTGGGGTTTTATAAATTGCACTAAGGAGAGAATGAAGCTTAGGACAAA
TATGTGATCAAGTTAAAACATTCATTCTAGGTCAGATCCAAGGATGAAGC
CACAAGTGTATACTATGATAAAGCAAGGCCATGTGAAACTGTGGCTTTGA
ACTTATACTGAGCTTACAGAATGAAACACTGCTTTGAACTTACTACTGAC
ATCCTTCTGTAACTCCTCTTTGGTGTAACATTTATCTGTGAGGTAATTTT
ATAAAGAACTTTTGTCTAAAATAGTAAATTGCCGAAGAGAAAAAATAAAG
TGAGGCTTTTGGGGCTCTACTCCAGCCACCAAATGTCTATATGTCTATAT
GTCTGTCTGTCTATATATATGTGCATACATACATATATAGGTATATGTGT
ATGTAAATAATTATTCATGTGCACTTGTGAAACTGATGAAATAGGTGATC
AGTCCAGACAGCGCTGTGTGTGTGTCCCTATCTGTTTATTTGTTTTTATA
GTATTATCATAACTTTTATCCTTTTTTTACCCTACTGCTTACATTATTTC
TTGCGATTTTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_k22.b1 MSMg01no494_k22.b1 CHROMAT_FILE:
MSMg01no494_k22.b1 PHD_FILE: MSMg01no494_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:34 2005
         (580 letters)



>mm_chr2_126709058_126710037
          Length = 980

 Score = 1096 bits (567), Expect = 0.0
 Identities = 573/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgtgctactttcgtgggagtgttcttgcctcttcctgtgagtcacaaggtggct 65
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtgctactgtggtgggagtgttcttgcctcttcctgtgagtcacaaggtggct 265

                                                                       
Query: 66  ctgagaataaaataaataaaaaagacaccagcttaccccacccccaaggagcagacctgg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgagaataaaataaataaaaaagacaccagcttaccccacccccaaggagcagacctgg 325

                                                                       
Query: 126 cagtggttgggagacctcaggtgagtttcattaatacccaaggtgtagtaacaatggact 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagtggttgggagacctcaggtgagtttcattaatacccaaggtgtagtaacaatggact 385

                                                                       
Query: 186 ggggtgaactataagaaaaaagaacttcaaggtagagagaggtttctggccatgaagccc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggggtgaactataagaaaaaagaacttcaaggtagagagaggtttctggccatgaagccc 445

                                                                       
Query: 246 tcctgttaataaattttggcttcatagaattagcaaccaaattgcaagtggaatgcaaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcctgttaataaattttggcttcatagaattagcaaccaaattgcaagtggaatgcaaga 505

                                                                       
Query: 306 ttatttgaaatttaatggtgaaaacacatgctcttccaatgatcttttattgagctgaga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttatttgaaatttaatggtgaaaacacatgctcttccaatgatcttttattgagctgaga 565

                                                                       
Query: 366 gccttgcctaccctgaagctttcacagctataaactgaggtgactgtccttgcctgttgt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gccttgcctaccctgaagctttcacagctataaactgaggtgactgtccttgcctgttgt 625

                                                                       
Query: 426 cttggagtggcatctaaactcaggccctcaagctggatcagcaagcactatatttgctga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttggagtggcatctaaactcaggccctcaagctggatcagcaagcactatatttgctga 685

                                                                       
Query: 486 gctatctactcaacttccagaggcttactttcagtgctagtaaaagcaagaaggtaaaaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gctatctactcaacttccagaggcttactttcagtgctagtaaaagcaagaaggtaaaaa 745

                                              
Query: 546 tgatttaaagacaagagactcctgtctttgtgtgg 580
           |||||||||||||||||||||||||||||||||||
Sbjct: 746 tgatttaaagacaagagactcctgtctttgtgtgg 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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