BAC Information

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BAC

Clone NameMSMg01-495E17
Chromosome2 (Build37)
Map Location 79,557,303 - 79,741,018
singlet/doubletdoublet
Overlap genePpp1r1c, Pde1a
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream geneLOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495E17.T7 (MSMg01no495_e17.b1)MSMg01-495E17.TJ (MSMg01no495_e17.g1)
ACCAG572372AG572373
length735816
length of high quality
(start - end)		568 (55 - 622)243 (80 - 322)
definitionCHROMAT_FILE: MSMg01no495_e17.b1 PHD_FILE: MSMg01no495_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:20 2005CHROMAT_FILE: MSMg01no495_e17.g1 PHD_FILE: MSMg01no495_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(79,557,303 - 79,557,865)(79,740,779 - 79,741,018)
sequence
CCCCTNTTNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGA
GGATCCGCGGAATTCTTCAAGGTCTCAGAAGGTGACCATGGAAAGTCAGA
GGTAGAAGGAAAATCCTGTCCCAAACCATGTGTTCAAGCTGGGAAGACTT
CACTGTTAAATTTCAGTTGATGCTTTGTTTCTTCAGACCTTCCCTAACGT
TCCGGGGATCCCAGCACATTGTGAAATGCTACATCTATATCTACAAGTCT
TCTCTGTATCATTTATTAGTTAGAATAAGTTGATACATGGGCAATGGGGG
TTGAATAATGCTATTTATAAAATAAAATTGCCAAAGTCTGCATCATTAAT
GGGCAAAATATTGATAGTCCAATTTTAATATAATAACAATACAGACTTAG
CAACATACTAAAAAGAACTACCCTGTGAGATAGAACAGGACATTTGCACT
TTTTATTTCCTGTGCTCTCTGGTAGCAATTTTTTATCACTATGAGAAATA
ATTTTCAGGATCTTAATCTTCAAATATAAATATACATTGCTGAGCTTGTA
TATGGAAGGGATGGTATATATAAACTGACTATGCAAAAAGAAAGAATTAA
GTCAGTTATAATAAAACCCAGTTTTAAAAACACTACTCTCAGTCATACAG
GGGGGTTTTGTCTGGCATCTCTACCATATATTTTTGAGTGATGGGCTCAA
AAATTGAAGCTCGCCAATTTTCTATATGAGCTTCT

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCCAGCTCTATAAAGGAGA
TACTGTGGTCTCTTGAACTTCCACCGTAGGAGACAAGGAGAACTTCCCCA
CCCATTAAGCTACATGCAAAGAGAACTCCACCTCAAAGGCTTTTCATTCT
TAACTCCCTTTTCTGCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCCT
CTCCTCTCCTCTCCTCTCCTTTTTTTTCCTCTCCTCTCCTCGTTTCTTTT
CGCCGCTCATTTTTTCTTCTTTCTCCCTTTTAAGTTTACCTTTATTTTTT
TTTTGTTTGTTTCATTTGTATTCCCCCATTCTTTTTTTTTATTTTCCTCA
TCTTGTTCTTTTCTTCACTGTGCTGCCACTTGTTCTCTTCTTTTTTTCTC
TTGAACCTTTAGCCACTGACCTGTCCTTTTCACCTTTTTCGCCCATTTCT
ATCATATCCTCGTCTTCCCCTTTTTATCTCTCACTTTATATATCCCGTTT
TTCCCCCTGTCTGTTTTTTCTCTCCTCCTTCTTTCTTTATTATATTTTAT
TTCCTTTTTTCTCTTCTTTTTTTCCTCCTTCCGCCCAATGTTGCTTCGTT
CCCTTTTATGCCCGCTTTTCCTCGCCTTACTATTTTCCCTTATCCTCCGC
CTTTTTTCCCGTACCTTCTTCCCTACTTTTCCTCTCCCCTTTTCGCCCCT
CCTTTTTTTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_e17.b1 MSMg01no495_e17.b1 CHROMAT_FILE:
MSMg01no495_e17.b1 PHD_FILE: MSMg01no495_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:20 2005
         (568 letters)



>mm_chr2_79557098_79558065
          Length = 968

 Score = 1058 bits (547), Expect = 0.0
 Identities = 559/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttcaaggtctcagaaggtgaccatggaaagtcagaggtagaaggaaaatcctgt 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttcaagggctcagaaggtgaccatggaaagtcagaggtagaaggaaaatcctgt 265

                                                                       
Query: 66  cccaaaccatgtgttcaagctgggaagacttcactgttaaatttcagttgatgctttgtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cccaaaccatgtgttcaagctgggaagacttcactgttaaatttcagttgatgctttgtt 325

                                                                       
Query: 126 tcttcagaccttccctaacgttccggggatcccagcacattgtgaaatgctacatctata 185
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcttcagaccttccctaacattctggggatcccagcacattgtgaaatgctacatctata 385

                                                                       
Query: 186 tctacaagtcttctctgtatcatttattagttagaataagttgatacatgggcaatgggg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctacaagtcttctctgtatcatttattagttagaataagttgatacatgggcaatgggg 445

                                                                       
Query: 246 gttgaataatgctatttataaaataaaattgccaaagtctgcatcattaatgggcaaaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttgaataatgctatttataaaataaaattgccaaagtctgcatcattaatgggcaaaat 505

                                                                       
Query: 306 attgatagtccaattttaatataataacaatacagacttagcaacatactaaaaagaact 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attgatagtccaattttaatataataacaatacagacttagcaacatactaaaaagaact 565

                                                                       
Query: 366 accctgtgagatagaacaggacatttgcactttttatttcctgtgctctctggtagcaat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 accctgtgagatagaacaggacatttgcactttttatttcctgtgctctctggtagcaat 625

                                                                       
Query: 426 tttttatcactatgagaaataattttcaggatcttaatcttcaaatataaatatacattg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttttatcactatgagaaataattttcaggatcttaatcttcaaatataaatatacattg 685

                                                                       
Query: 486 ctgagcttgtatatggaagggatggtatatataaactgactatgcaaaaagaaagaatta 545
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 686 ctgagcttgtatatggaagggatggtatatataaactggctatgcaaaaagaaagaatta 745

                                  
Query: 546 agtcagttataataaaacccagt 568
           |||||||||||||||||||||||
Sbjct: 746 agtcagttataataaaacccagt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no495_e17.g1 MSMg01no495_e17.g1 CHROMAT_FILE:
MSMg01no495_e17.g1 PHD_FILE: MSMg01no495_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:20 2005
         (243 letters)



>mm_chr2_79740691_79741333
          Length = 643

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccagctctataaaggagatactgtggtctcttgaacttccaccgtaggagacaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 328 tctccagctctataaaggagatactgtggtctcttgaacttccacagtaggagacaagga 269

                                                                       
Query: 61  gaacttccccacccattaagctacatgcaaagagaactccacctcaaaggcttttcattc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaacttccccacccattaagccacatgcaaagagaactccacctcaaaggcttttcattc 209

                                                                       
Query: 121 ttaactcccttttctgcttctcttctcttctcttctcttctcttctcttctcttctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttaactcccttttctgcttctcttctcttctcttctcttctcttctcttctcttctcttc 149

                                                                       
Query: 181 tcttctcttctcttctcttctcttctcttctcttctctcctctcctctcctctcctctcc 240
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||
Sbjct: 148 tcttctcttctcttctcttctcttctcttctctcctctcctctcctctcccctcccctcc 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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