BAC Information

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BAC

Clone NameMSMg01-495I19
Chromosome2 (Build37)
Map Location 104,507,722 - 104,508,127
singlet/doubletsinglet
Overlap genenone
Upstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3
Downstream geneTcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I19.T7 (MSMg01no495_i19.b1)MSMg01-495I19.TJ (MSMg01no495_i19.g1)
ACCAG572567AG572568
length701742
length of high quality
(start - end)
633 (64 - 696)477 (75 - 551)
definitionCHROMAT_FILE: MSMg01no495_i19.b1 PHD_FILE: MSMg01no495_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:38 2005CHROMAT_FILE: MSMg01no495_i19.g1 PHD_FILE: MSMg01no495_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAACTTTNTNNTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTCACCTGTGCAATACCGAATGGCTGAGAAA
CACCTGAAAAAATGTTCAGGATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACTCTGAGATTCTATCTCACACCAGTCAGAATGGCTAAGACCAAAA
ATTCAGGTGACAGCAGATGCAGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCTAGAAGATGTCCCAACTGGTAAGAAGGAC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAGTAACACAATCA
CAAAAGAACTCAAATGATATGTACTCACTGATAAGAAACTTAGGATACCT
GAGATATAAGATACAATTTGCAAAACACATGAAACTGAAGAAGAACAAAG
ACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCC
ATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGAC
C
CCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCTACCAGCATGGGGTCCCAGCC
CCCTCCCCCCACCCACTCATGCATGAATACACATGTGCACTTCTCCAGGA
CAAAATATCCTTTGGAGTATAATTATTCTCTGGAAATGACATTTCACTTG
ACTTCCCAACAGGATTATGGAAATGTATCTTTTTGTGAATCTATTTAGCT
GGTGCTTCGAGCCACAGTTTGAATCTCATTTTTGTTTGTTTGTTTGTTTG
TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC
TCTGTAGACCAGGCTGTTCTTTAACTCGGAGATCATCCTGCCCCTGTCTC
CGGAGTGCTCAGACTAAAGGTGTGCACCACTACAGCCTGGCTAGTGTATG
AATTTAACCTAACATAGTACCCCATGCTTTGGTTTTGTTTTTGCCATTTT
TTGTGTTGTTACTCTCTTTCCTGGGTTTGATCTTTCTTTCTGAACAACAA
CCCTTTAAGGTCCAGTTAGTCTTCCAGCTTTCCTATAAATGAGTTAAGAA
GAGGTCTATTTCCTTGGTAGCAACCAATGAGCAAATATAGCGGTTTGGGG
GACAAATTTTCCCTCCTTATAACTTGGTTAATTGGTTGTAAATCTCTTAG
ATGCTCTCCGTTTTGTTCATGATTAAAATGTTCTTTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i19.g1 MSMg01no495_i19.g1 CHROMAT_FILE:
MSMg01no495_i19.g1 PHD_FILE: MSMg01no495_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:39 2005
         (477 letters)



>mm_chr2_104507722_104508598
          Length = 877

 Score =  630 bits (326), Expect = 0.0
 Identities = 371/406 (91%), Gaps = 31/406 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctaccagcatggggtcccagccccctccccccacccactcatgcatgaatacacat 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcttctaccagcatggggtcccaaccccctccccccacccactcatgcatgaatacacat 347

                                                                       
Query: 61  gtgcacttctccaggacaaaatatcctttggagtataattattctctggaaatgacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtgcacttctccaggacaaaatatcctttggagtataattattctctggaaatgacattt 287

                                                                       
Query: 121 cacttgacttcccaacaggattatggaaatgtatctttttgtgaatctatttagctggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cacttgacttcccaacaggattatggaaatgtatctttttgtgaatctatttagctggtg 227

                                                                       
Query: 181 cttcgagccacagtttgaatctcatttttgtttgtttgtttgtttg-------------- 226
           |||| |||||||||||||||||||||||||||||||||||||||||              
Sbjct: 226 cttcaagccacagtttgaatctcatttttgtttgtttgtttgtttgtttgttttttgttt 167

                                                                       
Query: 227 -----------------ttttttgagacagggtttctctgtgtagccctggctgtcctgg 269
                            |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 166 ttgttttgttttggtttttttttgagacagggtttctctgtatagccctggctgtcctgg 107

                                                                       
Query: 270 aactcactctgtagaccaggctgttctttaactcggagatcatcctgcccctgtctccgg 329
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 106 aactcactctgtagaccaggctggtctttaactcggagatcatcctgcccctgtctccgg 47

                                                         
Query: 330 agtgctcagactaaaggtgtgcaccactacagcctggctagtgtat 375
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  agtgctcagactaaaggtgtgcaccactacagcctggctagtgtat 1



 Score =  103 bits (53), Expect = 3e-26
 Identities = 57/59 (96%), Gaps = 2/59 (3%)
 Strand = Plus / Minus

                                                                      
Query: 234 agacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctg 292
           |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 806 agacagggtttctctgtgtagccctggctgtcctggaactc--tctgtagaccaggctg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)