BAC Information

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BAC

Clone NameMSMg01-495K15
Chromosome2 (Build37)
Map Location 55,980,657 - 55,981,030
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K15.T7 (MSMg01no495_k15.b1)MSMg01-495K15.TJ (MSMg01no495_k15.g1)
ACCAG572654AG572655
length713744
length of high quality
(start - end)
374 (336 - 709)579 (75 - 653)
definitionCHROMAT_FILE: MSMg01no495_k15.b1 PHD_FILE: MSMg01no495_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:46 2005CHROMAT_FILE: MSMg01no495_k15.g1 PHD_FILE: MSMg01no495_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTGTTTGTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCA
AAAACGCGGAATTCTAAAAAGCATTGCGGAAAACGGGCTTCTGATTTAGT
TTCACAGGCTCCTGGGACATCAATTTTTAAAGGCCTAGTCAACAGATTAC
AGAAATCATTCAAGTTAAATTTTTATTAGAAAAAAATTACTTCACAAATA
TCCTTCCTTGTGAAAATATAAACTTAAATATGTCTAGCCAAGGAGGAATC
ATAAAAAGGGTAAAGTAAAGAATGCAAAAGAATTTTTGAAATGTGGGTAT
GGAGCCCTCTGGTTAAATAGCTTTCCTATTTTTTCAGTCAAGTAATTAAT
ATCAATTGCTATTTCCAAAGGCACCTAAAGCATTAGCAGTAATTAGCTAG
TGCTCTCATAAAAAGAGGGTCTAAGATTCAACTATTAACAGTTCCAAACA
TACCAAACCACCAGAAAGCCTTTTCATTGGCTCCAATTTGTAAATTAGGT
ATTATTGAAGCTATAGTTCTGAAGAGGGTATTAACTTCTCTGCGAAATGT
GCATCAAGTCTTTATTTTAATATTACGTGTATGAAAATAGGAGCAGTAGG
ACTTTTTCTAGGGTCCATGATCTCTCAAACTGTGGGTAGCTGGTTAACTT
TACAGTTCCAGACATGAATTCTCTCTTATTGAGCAGCCCTTAAGTCTAAT
TAGATCCTGCTTA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGCCCTACTTTGGTGTATATTTCT
ATGTATTTATGTATCTATGTATCTATATCTCCATCTACACACACACACAC
ACACACATACACACATTCTCACACACACACACAAGATATAATAAGACAAG
GCAATCGAGGCTGAACAATGCAACCCAATAGGAGAAAAATATTCTAAAGA
GCTAGGCAAAAGAGACACAGATTCATCCATCTCCACTATTAGGAGTTATA
CAAAGACACCAAGCTAACATTTTTTACAAAGATTTTTTAGGAACTGATGC
AGCCCCTTGTAGGTCCATGCTTCAGTCTCTGAGATCCCATATAAGGCTTG
CTTAGTTAATTCAGAGATCCTTGTTCTGGTGTTCACCATCCACTCTGACT
TCAACAAACCTTCCTCCCTTTCTTCAGTGCAGTTCAATATCTATCTATCT
ATCCATCTATCCATCTATCTATCTATCTATCTATCATATATCTATCTATC
TATCTATTTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTG
TCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTATCTATC
TATCATCTATCCATCCATCTATCCATCTATCTATCTATCTATCTATATCT
ATATATCTATATATTTATCTATCTAGCTATTGATATCTATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k15.b1 MSMg01no495_k15.b1 CHROMAT_FILE:
MSMg01no495_k15.b1 PHD_FILE: MSMg01no495_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:46 2005
         (374 letters)



>mm_chr2_55980457_55981230
          Length = 774

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcaagtaattaatatcaattgctatttccaaaggcacctaaagcattagcagtaatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agtcaagtaattaatatcaattgctatttccaaaggcacctaaagcattagcggtaatta 260

                                                                       
Query: 61  gctagtgctctcataaaaagagggtctaagattcaactattaacagttccaaacatacca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagtgctctaataaaaagagggtctaagattcaactattaacagttccaaacatacca 320

                                                                       
Query: 121 aaccaccagaaagccttttcattggctccaatttgtaaattaggtattattgaagctata 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaccagaaagccttttcattgtctccaatttgtaaattaggtattattgaagctata 380

                                                                       
Query: 181 gttctgaagagggtattaacttctctgcgaaatgtgcatcaagtctttattttaatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctgaagagggtattaacttctctgcgaaatgtgcatcaagtctttattttaatatta 440

                                                                       
Query: 241 cgtgtatgaaaataggagcagtaggactttttctagggtccatgatctctcaaactgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgtatgaaaataggagcagtaggactttttctagggtccatgatctctcaaactgtgg 500

                                                                       
Query: 301 gtagctggttaactttacagttccagacatgaattctctcttattgagcagcccttaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagctggttaactttacagttccagacatgaattctctcttattgagcagcccttaagt 560

                         
Query: 361 ctaattagatcctg 374
           ||||||||||||||
Sbjct: 561 ctaattagatcctg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)