BAC Information

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BAC

Clone NameMSMg01-495M09
Chromosome2 (Build37)
Map Location 80,724,373 - 80,724,606
singlet/doubletsinglet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027
Downstream geneLOC100040624, LOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495M09.T7 (MSMg01no495_m09.b1)MSMg01-495M09.TJ (MSMg01no495_m09.g1)
ACCAG572737AG572738
length717733
length of high quality
(start - end)
234 (87 - 320)515 (76 - 590)
definitionCHROMAT_FILE: MSMg01no495_m09.b1 PHD_FILE: MSMg01no495_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:54 2005CHROMAT_FILE: MSMg01no495_m09.g1 PHD_FILE: MSMg01no495_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGCGTTTNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGA
AAAGCGCGCGGAATCAGAAATATTCANAAAACAAAGTAATGATCTATTTT
ATGGCATCATTTAAAAGTCTCTACCATACAGAAGGTAGCAACACATCAGG
CAATTTCCAATTTTAAATGCCTAACGTCTATAATCATGAATAAATTATAT
AGAACACAGAGAATACATTTCTCCCTCTGTTCTTGTCATAAGCTGGAATT
TATGATAAATACATGTCTCTATCAAGTTGGAGCCATCAAAAGCGACAGTT
TAAATGGTAGTGAGGAGTTGGATAGTAGTTGAGGGATCNNNGNNNGNNNG
ANNNNNNGANNNNNTTTGTTCCCCTNCTTTCNGTTNTTTCTGGCGCTGCC
TNGTGGTTTCCTCTTTTCCTGCGTCTCCCCCCCTTTTTTTTGTTTTTGTC
GGCGTTCTTCGGTCCGGTCCTGCTTTTCTCCTTTCCTCCTCCCTTTCCTT
CGTTCCCGCTTCCCTCCTTCCTTTGTTTTTTGCCTTTCCGCTTGCCTTTC
TCTGCCTCTTTTTTTCCTGTTTTCCTCCTTTTCTGTTCCCCTTTTTTTGC
TCGCTGTTCGTGTTTTTCTCTGTTTTCCCCCCTCCTTTTTTTTTTTTTTT
GTNCCCCCCCGTCTTCCTTGTTCTCCTCCCCTGCTTGGTCCCTTNTCTGC
CGTTTTTTTTTGCTTTT
NCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTAGATATTAGTCCCCTATCTGATTTAGAATAGGGAAAGATCCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTAC
AGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCCATTCTTGATCTTACT
GCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCTCCTTAGCCCATATC
TTCGAGGCTTTTCCCTAATTTCTTCTCTATACGTTTCAGTGTCTCTGGTT
TTATGTGGAGTTCCTTGATCCACTAAAATTTAACCTTAGTACAAGGAGAT
AGGAATGGATCAATTTCCATCCTTCTACATGGTAACCACCAGTTATGCCA
GCACCATTTGTTGATAATATTGTCTTTTTTCCACAGGATAATTTTAGCTC
CCTTGTCAAAGGTCTAGTGACCATAGGTATGTGGGTTCATTTCTTGGGTT
TCAATTCTATTCTATTGTTCTACTTGTCTGTCACTATATCAGTACTATTG
CTTTTTTATCACTATTGCTCTGCTATTTTAACTGTTTGTCAGGCTTGTGG
ATTCTTACAGAGGTTCTTCTCACTTTTATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_m09.b1 MSMg01no495_m09.b1 CHROMAT_FILE:
MSMg01no495_m09.b1 PHD_FILE: MSMg01no495_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:54 2005
         (234 letters)



>mm_chr2_80724173_80724806
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgatctattttatggcatcatttaaaagtctctaccatacagaaggtagcaacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgatctattttatggcatcatttaaaagtctctaccatacagaaggtagcaacacat 260

                                                                       
Query: 61  caggcaatttccaattttaaatgcctaacgtctataatcatgaataaattatatagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggcaatttccaattttaaatgcctaacgtctataatcatgaataaattatatagaaca 320

                                                                       
Query: 121 cagagaatacatttctccctctgttcttgtcataagctggaatttatgataaatacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagaatacatttctccctctgttcttgtcataagctggaatttatgataaatacatgt 380

                                                                 
Query: 181 ctctatcaagttggagccatcaaaagcgacagtttaaatggtagtgaggagttg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctatcaagttggagccatcaaaagcgacagtttaaatggtagtgaggagttg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)