BAC Information

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BAC

Clone NameMSMg01-495O02
Chromosome2 (Build37)
Map Location 167,675,143 - 167,675,435
singlet/doubletsinglet
Overlap genenone
Upstream geneArfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb
Downstream geneLOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495O02.T7 (MSMg01no495_o02.b1)MSMg01-495O02.TJ (MSMg01no495_o02.g1)
ACCAG572819AG572820
length737754
length of high quality
(start - end)
293 (329 - 621)162 (76 - 237)
definitionCHROMAT_FILE: MSMg01no495_o02.b1 PHD_FILE: MSMg01no495_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:02 2005CHROMAT_FILE: MSMg01no495_o02.g1 PHD_FILE: MSMg01no495_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGAGGATCTAXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTAACAGGAT
CCGCGGAATTCAATCCTTCAAAAAGACACGGTGAAAGGAGAACCGATTTG
TCAAAGTTATCCTGTGACCACCACAGGAACGCAGTGGAACATGTGCACGC
ATGCGTGATATGCCCACAGGCATGGTGCAAACACAGCATACCATATACAC
ACATTGTGTATGCATACATATGGCATGCATTTACATATCATTCACACATA
CGTTATTTGTGCATGCACCCACACAGACACCACACACACACACACACACA
CACACACTTTCCCGCACTGTTTTTTTTGTGCTCAGAACTGTGAAGCCACC
TGGATTTCTTTATTTCTATCACCTTCGGCCCAGCAGCACTTGACAGAACC
TCCCTGTGCCCCACTCACTCCAGCCCTAGCCTTGATTCTCCACATGCACA
AGAGGGCTTCCACCTTCTGCTCAGAACTCTCTATGGCTCCCACCTACTGC
AGAGACAGACCCAACAAGCCCTCCTTTGAAAAGGCACACATCCCTGCCTC
ACTTCCATCTTCGTGTACATGGCCCCAGCCACACCACCTCTCCTCTGTTC
TCTTCACAGATTCAGGGCAGGATCGAGCCCCAGGGCCTTGCCACTTGCTG
GTTCAAATGCTACTCACCGAGGCCTCTCCTGCCCTTCACTGCTCACCCTG
GGTCAGAGCTGAGCCTCTCTCACCCCAGTCCTCTCTG
CTATGCTGNGNGTATTTCGGAGGGCNGCCCAATTTTGTATTTGCCGNGAA
NNANCCCAATANAATCTATGCGCGTTAAAGGGACAGCTGGGGTCTGGTAG
CACAGGCCTGTGTTTCCAGCTGCTCTGGAGGTTGAAGTAGGAGGATCAAG
GCCAGCCTGGGCAACTTATCAACACCCTGTGTCAAAAGAATAAAAAAGAG
GGCTGGGGTGTAGCTTGTTGGCAGAGCTGTGGCCAGTGTGGGCTTTTTTA
GGGTCTCCCGACTACAGCACTGTCACAAGAAAAGGAAAGAAGAGAAGACA
AGACCACACACCATTTTTTTTTTAGAAGAGAAGAGAAGAGAAGAGAAGAG
GAAAGAAAATATTTTTACCAGGCACACCAAGCACACCCATTCTTGGTTGG
TCTGGCCACACCAGAGACCTCTGCAGCCTAGGTTCCTCCAAACATGAGGT
TGGGACAGGAAGCAGGGAAGGAACTGGGTCTGGATAGGGCTGTGCCAGCT
GCTCGGGCCTGGTGGGGCCTCAGAGCCCTGAGGGAGGGCTGGCAGCCACA
GCGAGGTGACAGGCATGGCCTATTGAGCAAAGAACCTGNGGAGAACAACG
ATCCTCTGGTCTCCCTGTGGGACAGCTGGGTCACCCGTGGGTGGTTGATT
CTGTTAGGGAGGCTGCCCTGGGGCCAGCTTAGCCCATCTGGAGGCCAGAA
CGCTCAGCTCTGTGATAAGGGGGAGTCTGGTCTCCAGGGCCTGAGTCACC
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_o02.b1 MSMg01no495_o02.b1 CHROMAT_FILE:
MSMg01no495_o02.b1 PHD_FILE: MSMg01no495_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:02 2005
         (293 letters)



>mm_chr2_167674943_167675635
          Length = 693

 Score =  513 bits (265), Expect = e-150
 Identities = 286/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctcagaactgtgaagccacctggatttctttatttctatcaccttcggcccagcagca 60
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 493 tgctcagaactgcgaagccacctggatttctttatttctatcaccttcagcccagcagca 434

                                                                       
Query: 61  cttgacagaacctccctgtgccccactcactccagccctagccttgattctccacatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttgacagaacctccctgtgccccactcactccagccctagccttgattctccacatgca 374

                                                                       
Query: 121 caagagggcttccaccttctgctcagaactctctatggctcccacctactgcagagacag 180
           ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 373 caagagggcttctgccttctgctcagaactctccatggctcccacctactgcagagacag 314

                                                                       
Query: 181 acccaacaagccctcctttgaaaaggcacacatccctgcctcacttccatcttcgtgtac 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 313 acccaacaagccctcctttgaaaaggcacacacccctgcctcacttccatcttcgtgtac 254

                                                                
Query: 241 atggccccagccacaccacctctcctctgttctcttcacagattcagggcagg 293
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 253 atggccccagccacaccacctctcctctgttctcttcacatattcagggcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)