BAC Information

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BAC

Clone NameMSMg01-496C13
Chromosome2 (Build37)
Map Location 139,376,481 - 139,376,909
singlet/doubletsinglet
Overlap geneC130053K05Rik
Upstream geneLOC628103
Downstream geneLOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496C13.T7 (MSMg01no496_c13.b1)MSMg01-496C13.TJ (MSMg01no496_c13.g1)
ACCAG573032AG573033
length1,056760
length of high quality
(start - end)
---431 (330 - 760)
definitionCHROMAT_FILE: MSMg01no496_c13.b1 PHD_FILE: MSMg01no496_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:24 2005CHROMAT_FILE: MSMg01no496_c13.g1 PHD_FILE: MSMg01no496_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCCAATATAAAAGATGTTGGGGAGAGGGGTGAGTGGTTTCTCCTCGAAA
GGGAGGGCGGGAGGCGCCGAGCCTTTCTCTCCCAATAGAAGGGCGTATGA
AGACAGGGTTAAGGCAAACCGGGGGCGAGTAGACATCCTATCCCTATACT
GGATCGCCTTCATATCACTAAGACCATGTCACTCCCCGGAATCTCGCGTA
TATCACAGCTGCCCTTCGTCTCTTTGTGCCTGTGTCAATATGACAACGCG
GCGCCGCCGGCGCTCAGAGCGGCAGCTATTATTCCGAACAGGATCCGGTA
TCCGAGGGGGCGGCGCCGCGCTCGGAGGACGGCGAAAAGGAGATCTGTGC
GATTTACTGCATGCGCGTATTTAGATTGGCGTAACGAAATTAACTATGAT
TATCACTTTATGCTACCATAGACAAACTGACGCACGCGGGCGACACGCGG
GGACGGAACAACAACATATATAATGCGCTTACCGGCGCTTGTGGGCACAA
TAGTGACGTACTTCGCGACAGCAACCTGTGATAGAGTAAGTGGATCAAAA
AACCATCCTGGGGCGTGTATTACATCTCTCTAAGTGCTGGAGGCGCCCGA
GTAATATTAGATACGGCGGCCTAACTCGTATATCGAGGAGCAGAGCGGGG
CAGGAAGAATCCAGTGTGGCGCGGGAGAAACCGCCGATGCAGACGGATTA
TAATCATAGTAGCTCGCCGCAGGCTTCGTGGTCTCGTACCACGAGGTCCG
CCGCGACGGCTAACAAGAAGTAAATAGTAATAACCAGTGAGATGATGCGA
AGCGCGGCGAGCGCGTTGACACATCGCGNGCGATAATATGTGTGCGACGC
GTACGCAATCACGCCCCCCTATTTAATGACCTACCGCACCCGCCGCGCCA
CCTTATATACACTCCGCCGCCGACAAATGACGTGAAGACGCATCATAACA
CAGTACAGACACAGATGTAAGTGGAGGTTGAGGGCGCGGCGTGTGGCGGG
GAGATGTTTTCAGCAGCGCTATGTTTATACACGGTCGCTGTCAATGGATA
TCCTAG
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCAAAAACAGGCCTGCATTTTCTTAGATTTGAAC
TTGTGATTTGATTAAGAGCTATTGGGTGATACTACAGCATCACATAGGGC
ATTGGGGTTATGTACAAATGATGCACTTCTACTGTAATCCAGTCATCACC
TTTGTGTGTACAGGGGAAGAAAGATGAGAAAATATACATTTTGGTAGAAT
TAATGTTAGGAATGAAGAGAAATGCTTCTCCGTGGTTTCTCCAAAATTAA
CTTTTCCTGGGTTTGAAGACATGGGTCATCATGTGTCAGGATATGTTCAA
AGATTGAAACTAACTCACTTCACTGATTTTTGGGGTGTTTCTTAGCTACT
TGCCATTTTCTACTTATAGATATTATCTGCCAGGCATATGTGTTCATGCT
GAACAAAGTAAAAGATCACTGTACTTTGAGAAAGTCATTCATGCTATCTA
GTTTCTGGTAGCTCTCACAGTATGGGGAACTCTTTTTAGGAGGCAGATCT
GTTGTTAACCAATTTTCACCATTTAACGTTTTTCTTAAGATTATGAAGCA
TGTTTTCTAATCCAGTTACTTGAAATTATTTCAGATGAATGGCTTCCAGA
ATAATGATATTACTTTTTATGTTGCAGGATGCTTTCAAATAAACCATCTT
AGCTATTTATTCCATCACTGATGGTCTAGGTTCATGTTTCATCCTGGTTT
TTTTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_c13.g1 MSMg01no496_c13.g1 CHROMAT_FILE:
MSMg01no496_c13.g1 PHD_FILE: MSMg01no496_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:24 2005
         (431 letters)



>mm_chr2_139376281_139377111
          Length = 831

 Score =  822 bits (425), Expect = 0.0
 Identities = 428/429 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgtcaggatatgttcaaagattgaaactaactcacttcactgatttttggggtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 catgtgtcaggatatgttcaaagattgaaactaactcacttcactgatttttggggtgtt 570

                                                                       
Query: 61  tcttagctacttgccattttctacttatagatattatctgccaggcatatgtgttcatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcttagctacttgccattttctacttatagatattatctgccaggcatatgtgttcatgc 510

                                                                       
Query: 121 tgaacaaagtaaaagatcactgtactttgagaaagtcattcatgctatctagtttctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaacaaagtaaaagatcactgtactttgagaaagtcattcatgctatctagtttctggt 450

                                                                       
Query: 181 agctctcacagtatggggaactctttttaggaggcagatctgttgttaaccaattttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agctctcacagtatggggaactctttttaggaggcagatctgttgttaaccaattttcac 390

                                                                       
Query: 241 catttaacgtttttcttaagattatgaagcatgttttctaatccagttacttgaaattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catttaacgtttttcttaagattatgaagcatgttttctaatccagttacttgaaattat 330

                                                                       
Query: 301 ttcagatgaatggcttccagaataatgatattactttttatgttgcaggatgctttcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcagatgaatggcttccagaataatgatattactttttatgttgcaggatgctttcaaa 270

                                                                       
Query: 361 taaaccatcttagctatttattccatcactgatggtctaggttcatgtttcatcctggtt 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taaaccatcttagttatttattccatcactgatggtctaggttcatgtttcatcctggtt 210

                    
Query: 421 ttttttttt 429
           |||||||||
Sbjct: 209 ttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)