NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGTTCTCTTGGAATTTTAAACACAATAATTCACGTACC
TACCTACTGATGTCCTTCCCCAGTTATGGAGTGCTTAAAGCTTGATTGAA
AATTGTAATCAGTCATAGGAACAATATAGTTACTACTGAATACCAGATTT
TAAGGAGTCTGATACATCTGTTGTGTCACGTGAAAAGATTACATAATAAG
TTATAGTTCCTGAACACAGTGTTATAGATTGTTGCCAACATTCATTTTAT
ATAACATGTCACATAATATGCAACATGGAATTGAAGTAGCTTTCAATTAT
AAGATATATATCTATTAACTATTCTATTAGTTTGGTATTGTACTGTAAAA
TATTTGCTACGTACTAATAGAATAGTTAATAAATAAACCCTAACCCCTAC
TTATGTTTTCTTTAATGGGTGTCAGAAATCTTCAATTCCTGCTAAGTCCT
GCTTATAGTTTATTTTTAAGACATGAATGGACTGATGTGCTTGCCTAAAA
GACATGACGAAGTCACAACACCCAAGGACCTCGGAACACAGCCTCATTTG
GAAATGGAATTTTCAACACAGAATGATACAACTAANATAAGATCACTAGA
ATGGCTCCTAACTCAATATGACAAATATTTTTATAATAGACATGGAAACA
TTGGGAGAATCTCATGTGGCAGCAAAGGCAGAAAGCTCGGTGATTTCCCA
TATCGNCANGAATGCTACAAACCATCT

NNNNNGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAAT
GGCTGAGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAA
TGCAAATCAAAACAACCCTGAGTTTCCACCTCACACCAGTCAGAATGGCT
AAGAACAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTCGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTTTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAG
GATCCTGCAATACCTCTTCTGGGTATATATCCAGAAGATGTCCCAATGGG
TAAGAAGGGACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTACTAGGCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGA
TAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAAGATACAA
TTTGCTAAACACATTAAACTCAAGAGAATGGAAGACCAAGTGTGGACACT
TTTGCCCTTCTTAAATAGGAAACAA

Query= MSMg01no496_e22.b1 MSMg01no496_e22.b1 CHROMAT_FILE:
MSMg01no496_e22.b1 PHD_FILE: MSMg01no496_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:36 2005
         (582 letters)



>mm_chr2_14109827_14110808
          Length = 982

 Score = 1071 bits (554), Expect = 0.0
 Identities = 572/578 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagttctcttggaattttaaacacaataattcacgtacctacctactgatgtcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattcaagttctcttggaattttaaacacaataattcacgtacctacctactgatgtcc 723

                                                                       
Query: 65  ttccccagttatggagtgcttaaagcttgattgaaaattgtaatcagtcataggaacaat 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttccccagttgtggagtgcttaaagcttgattgaaaattgtaatcagtcataggaacaat 663

                                                                       
Query: 125 atagttactactgaataccagattttaaggagtctgatacatctgttgtgtcacgtgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atagttactactgaataccagattttaaggagtctgatacatctgttgtgtcacgtgaaa 603

                                                                       
Query: 185 agattacataataagttatagttcctgaacacagtgttatagattgttgccaacattcat 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 602 agattacataataagttatagttcctgaacatagtgttatagattgttgccaacattcat 543

                                                                       
Query: 245 tttatataacatgtcacataatatgcaacatggaattgaagtagctttcaattataagat 304
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 542 tttatatagcatgtcacataatatgcaacatgtaattgaagtagctttcaattataagat 483

                                                                       
Query: 305 atatatctattaactattctattagtttggtattgtactgtaaaatatttgctacgtact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atatatctattaactattctattagtttggtattgtactgtaaaatatttgctacgtact 423

                                                                       
Query: 365 aatagaatagttaataaataaaccctaacccctacttatgttttctttaatgggtgtcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aatagaatagttaataaataaaccctaacccctacttatgttttctttaatgggtgtcag 363

                                                                       
Query: 425 aaatcttcaattcctgctaagtcctgcttatagtttatttttaagacatgaatggactga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 362 aaatcttcaattcctgctaagtcctgcttatagtttatttttaagacatgaatggaccga 303

                                                                       
Query: 485 tgtgcttgcctaaaagacatgacgaagtcacaacacccaaggacctcggaacacagcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgtgcttgcctaaaagacatgacgaagtcacaacacccaaggacctcggaacacagcctc 243

                                                 
Query: 545 atttggaaatggaattttcaacacagaatgatacaact 582
           ||||||||||||||||||||||| ||||||||||||||
Sbjct: 242 atttggaaatggaattttcaacagagaatgatacaact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)