Query= MSMg01no496_h22.b1 MSMg01no496_h22.b1 CHROMAT_FILE:
MSMg01no496_h22.b1 PHD_FILE: MSMg01no496_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:50 2005
(537 letters)
>mm_chr2_52289235_52290171
Length = 937
Score = 878 bits (454), Expect = 0.0
Identities = 463/470 (98%), Gaps = 7/470 (1%)
Strand = Plus / Minus
Query: 68 ccgcaagagtaggaaccgcttgtcttccagctcccagcacagccgagaccactaccctct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 ccgcaagagtaggaaccgcttgtcttccagctcccagcacagccgagaccactaccctct 878
Query: 128 ggtggaagaagattacccggactcgtaccaggacacttataagccccataggaaccgagg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggtggaagaagattacccggactcgtaccaggacacttataagccccataggaaccgagg 818
Query: 188 atcgcccggggggtgcagccatgactcccgacataggctttgaggctgccgaaacaaaca 247
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 817 atcgcccggggggtgcagccatgactcccgacataggctttgaggctgccga-------a 765
Query: 248 acaaacaaacaaacaaacaaacaaacatcatctgttgacaatttgccatagtactgctat 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 acaaacaaacaaacaaacaaacaaacatcatctgttgacaatttgccatagtactgctat 705
Query: 308 taaccagtcatcttaatttggcaagcacagcacagtatctgctgtgtgggtgggctgctg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 taaccagtcatcttaatttggcaagcacagcacagtatctgctgtgtgggtgggctgctg 645
Query: 368 tcatttgatcctaggggcaagaattaaatagaagtacattatgcccttgagtctagatgg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcatttgatcctaggggcaagaattaaatagaagtacattatgcccttgagtctagatgg 585
Query: 428 gtattagatgcccgatcatataggtatttttaagtgctacatttacatgataacagtacc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtattagatgcccgatcatataggtatttttaagtgctacatttacatgataacagtacc 525
Query: 488 ttttgttttcttcatagattttagacacatcaatttgtaatttagggtac 537
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttttgttttcttcatagattttagacacatcaatttgtaatttagggtac 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_h22.g1 MSMg01no496_h22.g1 CHROMAT_FILE:
MSMg01no496_h22.g1 PHD_FILE: MSMg01no496_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:51 2005
(546 letters)
>mm_chr2_52154839_52155784
Length = 946
Score = 1040 bits (538), Expect = 0.0
Identities = 544/546 (99%)
Strand = Plus / Plus
Query: 1 cggtgcatctgctggcacgctgcacttgaatttctcaccttcatgctttgctttgtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggtgcatctgctggcacgctgcacttgaatttctcaccttcatgctttgctttgtaatt 260
Query: 61 cagctgaagggttatgggggcagggagggaaaatatgttactgtgggctgactgtgtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgaagggttatgggggcagggagggaaaatatgttactgtgggctgactgtgtgtc 320
Query: 121 ccaattacacttaatcccttaaagtctccattggtggtacttaacaggacccacccatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaattacacttaatcccttaaagtctccattggtggtacttaacaggacccacccatca 380
Query: 181 gaggtgataggctcacaagaactctgccctcatggtctgattggccagcagaaatggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtgataggctcacaagaactctgccctcatggtctgattggccagcagaaatggcct 440
Query: 241 cattatttaaatgagctctgaggagggcttgctctctggccccctaagcaaagcctgtgc 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattataaaaatgagctctgaggagggcttgctctctggccccctaagcaaagcctgtgc 500
Query: 301 aatgcaatgattcaacaagaaacccaggactggcaccaagcccttagacttcctaacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgcaatgattcaacaagaaacccaggactggcaccaagcccttagacttcctaacctt 560
Query: 361 tgaaactatgaattaagtaacctttattctttttgaggggcaacaagaccgatttagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaactatgaattaagtaacctttattctttttgaggggcaacaagaccgatttagata 620
Query: 421 taatgtcttaccaggaagcccaaattgtcctcaaactcaagatcccctgcttcagcctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatgtcttaccaggaagcccaaattgtcctcaaactcaagatcccctgcttcagcctcc 680
Query: 481 tagtgctcaggtttcagtcaagggcaattatttctggtaaacttctattctttataaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtgctcaggtttcagtcaagggcaattatttctggtaaacttctattctttataaatt 740
Query: 541 acttgg 546
||||||
Sbjct: 741 acttgg 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
