Query= MSMg01no496_l04.b1 MSMg01no496_l04.b1 CHROMAT_FILE:
MSMg01no496_l04.b1 PHD_FILE: MSMg01no496_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:07 2005
(544 letters)
>mm_chr2_55580900_55581842
Length = 943
Score = 969 bits (501), Expect = 0.0
Identities = 531/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 4 agtactaatgatatatgacccattttatagattgagaccaacatctgctgtcattttcaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agtactaatgatatatgacccattttatagattgagaccaacatctgctgtcattttcaa 263
Query: 64 accttgatcactctaattagttgaaatcttaaagtagttttaacctccatttacctaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accttgatcactctaattagttgaaatcttaaagtagttttaacctccatttacctaatg 323
Query: 124 attaaagttttgaacattgaaaaatatgcttaagatactggtatttcagtcttcgtagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attaaagttttgaacattgaaaaatatgcttaagatactggtatttcagtcttcgtagaa 383
Query: 184 cttcctatttagtttcatgccccattttaattggattgtttgttttatttttaagttctt 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttcctacttagtttcatgccccattttaattggattgtttgttttatttttaagttctt 443
Query: 244 ttattattactaactaaattaaaactatcacatgtataattagtaatttttttccattct 303
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaatattactaactaaattaaaactatcacatgtataattagtaatttttttccattct 503
Query: 304 gtgaactgcctctttattcatttatggtcatgacagacaccagttattaattttatttat 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 gtgaactgcctgtttattcatttatggtcatgacagacaccagttattaattttattaat 563
Query: 364 gtattgttggacacttgtctgcattgagtattgggacatgctagtcccttgatgaacatg 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 gtattgttggacacttgtctgcattgagtattgggacatgctattcccttgatgaacatg 623
Query: 424 tctgtcttatatgcgagtacaattctgtccttactattatacctcttagtatagtttaaa 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgtcttatatgccagtacaattctgtccttactattatacctcttagtatagtttaaa 683
Query: 484 ctaaggtcagtgatattgaagtgttgtattattattctggaatgtttgggtacactggtt 543
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct: 684 ctaaggtcagtgatattgaagtgttgttttat-attctggattgtttgggtacactggtt 742
Query: 544 t 544
|
Sbjct: 743 t 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_l04.g1 MSMg01no496_l04.g1 CHROMAT_FILE:
MSMg01no496_l04.g1 PHD_FILE: MSMg01no496_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:07 2005
(601 letters)
>mm_chr2_55734726_55735726
Length = 1001
Score = 739 bits (382), Expect = 0.0
Identities = 411/422 (97%), Gaps = 3/422 (0%)
Strand = Plus / Minus
Query: 180 gagtgtggttcctttacacaatggactactactcagctattgaaaacaaggacatcatga 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1001 gagtgtggttcctttacacaatggactactactcaactattgaaaacaaggacatcatga 942
Query: 240 attttgtattcaaatgtatgaaattagaaaatatcatcctgagtgaggtgacacagactc 299
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 941 attttgtaggcaaatgtatgaaattagaaaat---atcctgagtgaggtgacacagactc 885
Query: 300 aaaatgacatgcagagtatgcactcactcacaagtggatattaaccataaaatcggggaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aaaatgacatgcagagtatgcactcactcacaagtggatattaaccataaaatcggggaa 825
Query: 360 gccaagctaccattcacagatcctccattacttttcattttattctcactgattattgtt 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 824 gccaagctaccattcacagatcctccattacttttcattttattctcaatgattattgtt 765
Query: 420 tacttcttccttgtgtttgtgattataatgaaccaaactgaataatcagggataactcat 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 764 tatttcttccttgtgtttgtgattataatgaaccaaactgaataatcagggataacttat 705
Query: 480 ctgtaacctaaaacatttgcatagtttctaccatgccatgcaaggtgtgagagtgattta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctgtaacctaaaacatttgcatagtttctaccatgccatgcaaggtgtgagagtgattta 645
Query: 540 agatatctttgtgaaggtgagtattaaattttatctaagtaaataagtaaatacttatga 599
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 644 agatatctttgtgaaggtgaatattaaattttatataagtaaataagtaaatacttatga 585
Query: 600 at 601
||
Sbjct: 584 at 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
