NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCAACAGCTTTTCCAAACACAGAAAGGAACACAGGGTGAAG
AGAGCAATTGACAGGTAAGTTAAGGTTTCTGATATTTCTTTGTCCTTTTA
GATAAACATACACTTAGGAAGTTATCAAAACATTTTGAGTGTGAGAATTC
TTACACTTTAGATAAGATCTTTTATAATTGCAAGCTGTCTTAAGTCTCTG
AAAGCAACCTTGCAATCACTTGGAACTATATTAAGAAAAAACAAACAACA
AAATTTTAACATTTAAATGAGCATAACTTTCTTTAAATTGCGTCACTATT
TAAAGATTTCCTAATTTTTAAATGGTTTTATGATGACCACTTATTCTTGG
TTATTTAGATAAACTTTGATGTTAAAGGGTTCTACATCAACTTTGCTTAT
TTATTCTTTCCCTTGCTGTTTAGAATGTTAAAATTTATTTATTTTTAAAT
TTTATATGTATGTATGTGTGCGCACTTACTGGTCTGTATGTGAATCATGT
GCATTCAGGTTCGTAGAGACCAATGGCACAGCAAACTAAGGTGGGTTAAA
GATCCCAGGAAGGAATGTTGACAGCTGCTAACAACTGCTAGGCTCCAGGA
GAGCTCCTGATAAAGAAGATCTGTGGTCTCCTAAAGTAAAGACAAAAGAA
ATATCATGCAGTCATTCCTGTCAAATACTACAAACCCTGTGTCTCCTCCC
CCCACCGN

NATAGGCNNNNNNNNNNNNNNNNNNNAANNNNNNAAGAGAGAAGAGAGGT
AAGNNNAGNNAAGAAGGNTTANNNCTAANNNNNNAGGAGAATAAAAAACA
ATTGCAGGGGGTAGCCCTGGNCGGGCGAACGTGGCCTTTTCAATTTAAGG
GGGAAACCCNNNNAAAAAGGGATTTTCCGCGNAANATNTCTTTATCAAAA
AACAAGAAGGTGAGNTATAAAAGNNNNNNAAAAAAAAAAAAAAAAAAACA
TTTTTTNNNNTNNTTTTCCTCACACCCCTTTTAAAGGGGGAGAAAAATAT
AATATTTTTTTGAAACCGCGAGAGAAAAAAGCCGGGAGAAAAAATTCTTT
TGGCGGGGCGGCGCGGGAAAAAAAAAATAAAACCCCCCTTTTTTTTATTT
TATNNNNATNNNAAAGGANNNAAAGAAGAAAAATTTTTTTTTTTTTACCC
AACGAAGAAGAGGTGGGGGGGGGTGTTTTTTTTTTTTTTTTATTATTAAA
AACAACAAACAGCTTTTTTTTTTTTTGGTGTNCAAAAGAAAAAAATATAA
AAACATCACCCCCCTCTTTCCCTTGTTAGGTGTGCGGGGGGGGGTGTTTT
TTTTTTTATTTTGGTGGGGGTGTGGGAGAAAAAAAAAAAAAAAAAATTAT
AATTTTTTTTTTTTTTTTTTTTTTTCTTCCCTCGCCCGCACCCCCCCCTC
TCTTTTTTGGTTTGGTGAGGGGAGTAACCCAAGCCCCCCACCCCCCACCG
CCGCGGGGTGGGGTGTGGGTGAGTGCCCCTCTTTCTTTCTCCTCTTTTTT
TTTTTTCA

Query= MSMg01no497_a01.b1 MSMg01no497_a01.b1 CHROMAT_FILE:
MSMg01no497_a01.b1 PHD_FILE: MSMg01no497_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:32 2005
         (710 letters)



>mm_chr2_54274360_54275468
          Length = 1109

 Score = 1237 bits (640), Expect = 0.0
 Identities = 682/696 (97%), Gaps = 1/696 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaacagcttttccaaacacagaaaggaacacagggtgaagagagcaattgacagg 67
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| || 
Sbjct: 208 gaattcaacagcttttaaaaacacagaaaggaacacagggtgaagagagcaattgagaga 267

                                                                       
Query: 68  taagttaaggtttctgatatttctttgtccttttagataaacatacacttaggaagttat 127
           || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 268 tacgttaaggtttatgatatttctttgtccttttagataaacacacacttaggaagttat 327

                                                                       
Query: 128 caaaacattttgagtgtgagaattcttacactttagataagatcttttataattgcaagc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaaacattttgagtgtgagaattcttacactttagataagatcttttataattgcaagc 387

                                                                       
Query: 188 tgtcttaagtctctgaaagcaaccttgcaatcacttggaactatattaagaaaaaacaaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 388 tgtcttaagtctctgaaagcaaccttgcaatcacttggaactatattaagaaaaa-caaa 446

                                                                       
Query: 248 caacaaaattttaacatttaaatgagcataactttctttaaattgcgtcactatttaaag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caacaaaattttaacatttaaatgagcataactttctttaaattgcgtcactatttaaag 506

                                                                       
Query: 308 atttcctaatttttaaatggttttatgatgaccacttattcttggttatttagataaact 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atttcctaatttttaaatggttttatgatgaccacttattcttggttatttagataaact 566

                                                                       
Query: 368 ttgatgttaaagggttctacatcaactttgcttatttattctttcccttgctgtttagaa 427
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 567 ttgatgttaaagggttctacatcaactttgcttatttattctttcccttgttgtttagaa 626

                                                                       
Query: 428 tgttaaaatttatttatttttaaattttatatgtatgtatgtgtgcgcacttactggtct 487
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 627 tgttaaaatttatttatttttaaattttatatgtatgtatgtgtgtgcacttactggtct 686

                                                                       
Query: 488 gtatgtgaatcatgtgcattcaggttcgtagagaccaatggcacagcaaactaaggtggg 547
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 687 gtatgtgaatcatgtgcattcaggttcgtagagaccaatggcacagaaaactaagatggg 746

                                                                       
Query: 548 ttaaagatcccaggaaggaatgttgacagctgctaacaactgctaggctccaggagagct 607
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 747 ttaaagatcccaggaaggaatgctgacagctgctaacaactgctgggctccaggagagct 806

                                                                       
Query: 608 cctgataaagaagatctgtggtctcctaaagtaaagacaaaagaaatatcatgcagtcat 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cctgataaagaagatctgtggtctcctaaagtaaagacaaaagaaatatcatgcagtcat 866

                                               
Query: 668 tcctgtcaaatactacaaaccctgtgtctcctcccc 703
           ||||||||||||||||||||||||||||||||||||
Sbjct: 867 tcctgtcaaatactacaaaccctgtgtctcctcccc 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1109
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1099
Effective search space:   769300
Effective search space used:   769300
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)