BAC Information

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BAC

Clone NameMSMg01-497B16
Chromosome2 (Build37)
Map Location 77,049,252 - 77,124,931
singlet/doubletdoublet
Overlap geneSestd1
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
Downstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497B16.T7 (MSMg01no497_b16.b1)MSMg01-497B16.TJ (MSMg01no497_b16.g1)
ACCAG573752AG573753
length756765
length of high quality
(start - end)		543 (70 - 612)644 (78 - 721)
definitionCHROMAT_FILE: MSMg01no497_b16.b1 PHD_FILE: MSMg01no497_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:40 2005CHROMAT_FILE: MSMg01no497_b16.g1 PHD_FILE: MSMg01no497_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,049,252 - 77,049,794)(77,124,288 - 77,124,931)
sequence
NCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGCATTCCAAGACTCCAAATCTACTCCCTTATTATGCTAT
TCTCTTACCACCCCAAAAATGCCAGCCTCCTGCAAACCTTCTGTGTGGTA
AAATCTGCCATGTTTCTAGAAAATGGAGTCAACTGCTACTTCCTCCCACC
AGGCCTTGCCGACTCTGGCAATCACAGAAACAATCGGACGAGAAACGCCC
AAAGCACTGTGGTTCTATCCTTGTGATAGTTAACGCTTTTTCTCCTTACC
TCTATCAGCAAACAAAACTGAATCTACTTTTATAACCTGTATACAATTTA
GCACCATGCCTAAATATCTACCAAGAGAACCAATGACTCAAGATTTTTAA
AGAACACTTCAGTATTTCAAGCTGCTTATACTCGTTTTTAGAGGTTTCAT
TTTTAGTTATGTGTACATGTATGTCTGGGGATGAGTGTATACATATAAGC
ACAGGTACTATGGATGACAGAAAAGCATATAGCACCAGATCCCCTGGAGC
TGGAGTGACAGGTAACTGGGAGCCCTTGAAGTGGGTACTGGGAACTGAAC
TCAAGTCTTCTGCAAGAGCAGTATACTCTCTTACTGCTAAGTCATTTCTC
TAGCTGAACCAGCTTGTATCTTCAAATAAAAATTATTTAAAGGTTTATTT
TAATTGTTCAGTAGATAAAAATCTACCATAATCTAATGAACAGAAATGTC
TCATAT

NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAAGGAGGGGCCGCTTCAGG
CTCCAGCCTGAGGCTTTCCCAGTACAGAGCAGAACACAAGGCTCAATCTC
TACAAGAAATATTCTTGACCTTTCTATGCAGATGGCTGCAGCACATTAGG
AAAACAAGGGGGAACCAGCTGAGTAATTTGGACCAAGCTCGTCCTTCACA
TTATTTTCTCACTTAAAGATATCTGAGACCTGGCCCCACATTGAAATAGC
ATGTGCTGGAAGTGAAGGACCCAGCCCTGTTCCTTAAAGAAAACCTTTTC
AAGAGACAAATATTTCACTATGTATATTGAGCTTGACGATCAAGTTCTCA
GTGGTGAAGAAAACATGTTCGGACTTAAAATTTTAGACTTGTTTCAAGTA
ATAACTAAAGGCAGTCTGGTGAAGTAAGAAGAGTGGTATCTTTGTATAAC
TGTCATGGGCAGATAGAAGGACTTTTCTAGGGCAGGGATTTAAGAGTGCA
CCAGCAAATCAGAACATGAGTCTTTAAGCATATGATCTTAATATGAAATC
ATGAGACAGGGAAACAATTTACATTATTAGTCTAGTAGTTGACTGACTAT
ATAAAATATTTCACAAGAATCATCTCCCAATAATATCTGCTCAGAGAAGC
ACATATCCAGCCATGGCAGAGGACCTGTATGGTATCCTTTCTCTCTCTGT
GGCAACGTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_b16.b1 MSMg01no497_b16.b1 CHROMAT_FILE:
MSMg01no497_b16.b1 PHD_FILE: MSMg01no497_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:40 2005
         (543 letters)



>mm_chr2_77049052_77049994
          Length = 943

 Score = 1035 bits (535), Expect = 0.0
 Identities = 541/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactccaaatctactcccttattatgctattctcttaccaccccaaaaatgccagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactccaaatctactcccttattatgctattctcttaccaccccaaaaatgccagcctc 260

                                                                       
Query: 61  ctgcaaaccttctgtgtggtaaaatctgccatgtttctagaaaatggagtcaactgctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaaaccttctgtgtggtaaaatctgccatgtttctagaaaatggagtcaactgctac 320

                                                                       
Query: 121 ttcctcccaccaggccttgccgactctggcaatcacagaaacaatcggacgagaaacgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctcccaccaggccttgccgactctggcaatcacagaaacaatcggacgagaaacgcc 380

                                                                       
Query: 181 caaagcactgtggttctatccttgtgatagttaacgctttttctccttacctctatcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagcactgtggttctatccttgtgatagttaacgctttttctccttacctctatcagc 440

                                                                       
Query: 241 aaacaaaactgaatctacttttataacctgtatacaatttagcaccatgcctaaatatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaaaactgaatctacttttataacctgtatacaatttagcaccatgcctaaatatct 500

                                                                       
Query: 301 accaagagaaccaatgactcaagatttttaaagaacacttcagtatttcaagctgcttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaagagaaccaatgactcaagatttttaaagaacacttcagtatttcaagctgcttat 560

                                                                       
Query: 361 actcgtttttagaggtttcatttttagttatgtgtacatgtatgtctggggatgagtgta 420
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 acttgtttttagaggtttcatttttagttatgtgtacatgtgtgtctggggatgagtgta 620

                                                                       
Query: 421 tacatataagcacaggtactatggatgacagaaaagcatatagcaccagatcccctggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacatataagcacaggtactatggatgacagaaaagcatatagcaccagatcccctggag 680

                                                                       
Query: 481 ctggagtgacaggtaactgggagcccttgaagtgggtactgggaactgaactcaagtctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggagtgacaggtaactgggagcccttgaagtgggtactgggaactgaactcaagtctt 740

              
Query: 541 ctg 543
           |||
Sbjct: 741 ctg 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_b16.g1 MSMg01no497_b16.g1 CHROMAT_FILE:
MSMg01no497_b16.g1 PHD_FILE: MSMg01no497_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:40 2005
         (644 letters)



>mm_chr2_77124088_77125131
          Length = 1044

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttaaggaggggccgcttcaggctccagcctgaggctttcccagtacagagcagaacac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agttaaggaggggccacttcaggctccagcctgaggctttcccagtacagagcagaacac 785

                                                                       
Query: 61  aaggctcaatctctacaagaaatattcttgacctttctatgcagatggctgcagcacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaggctcaatctctacaagaaatattcttgacctttctatgcagatggctgcagcacatt 725

                                                                       
Query: 121 aggaaaacaagggggaaccagctgagtaatttggaccaagctcgtccttcacattatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aggaaaacaagggggaaccagctgagtaatttggaccaagctcgtccttcacattatttt 665

                                                                       
Query: 181 ctcacttaaagatatctgagacctggccccacattgaaatagcatgtgctggaagtgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctcacttaaagatatctgagacctggccccacattgaaatagcatgtgctggaagtgaag 605

                                                                       
Query: 241 gacccagccctgttccttaaagaaaaccttttcaagagacaaatatttcactatgtatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gacccagccctgttccttaaagaaaaccttttcaagagacaaatatttcactatgtatat 545

                                                                       
Query: 301 tgagcttgacgatcaagttctcagtggtgaagaaaacatgttcggacttaaaattttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgagcttgacgatcaagttctcagtggtgaagaaaacatgttcggacttaaaattttaga 485

                                                                       
Query: 361 cttgtttcaagtaataactaaaggcagtctggtgaagtaagaagagtggtatctttgtat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttatttcaagtaataactaaaggcagtctggtgaagtaagaagagtggtatctttgtat 425

                                                                       
Query: 421 aactgtcatgggcagatagaaggacttttctagggcagggatttaagagtgcaccagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aactgtcatgggcagatagaaggacttttctagggcagggatttaagagtgcaccagcaa 365

                                                                       
Query: 481 atcagaacatgagtctttaagcatatgatcttaatatgaaatcatgagacagggaaacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atcagaacatgagtctttaagcatatgatcttaatatgaaatcatgagacagggaaacaa 305

                                                                       
Query: 541 tttacattattagtctagtagttgactgactatataaaatatttcacaagaatcatctcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttacattattagtctagtagttgactgactatataaaatatttcacaagaatcatctcc 245

                                                       
Query: 601 caataatatctgctcagagaagcacatatccagccatggcagag 644
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 244 caataatatctgctcagaggagcacatatccagccatggcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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