BAC Information

Click to search

BAC

Clone NameMSMg01-497C04
Chromosome2 (Build37)
Map Location 100,642,631 - 100,643,119
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497C04.T7 (MSMg01no497_c04.b1)MSMg01-497C04.TJ (MSMg01no497_c04.g1)
ACCAG573776AG573777
length764757
length of high quality
(start - end)
249 (74 - 322)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no497_c04.b1 PHD_FILE: MSMg01no497_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:42 2005CHROMAT_FILE: MSMg01no497_c04.g1 PHD_FILE: MSMg01no497_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCTACCAGATTTCCAAAGTGATAATACCAATACTGCTCAAACTCT
TCTACAAAATAGAAACAGAAGGGGCTCAGAGGTAAACAAAAATTTCTCAC
CTGAGGAATACCGAATGGGTGAGAAGCACCTGAAAAAATGTTCAGCATCC
TTAATCATGAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACTTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGT
GTGGATGTAGAGAAAGAGGAATATTTTTCCATTGTTGGTGGGATTGCAAG
CTTGTACAACCACTCGGCAAATCAGTCTGGCAGTTTTTCAGAAAATTGGA
CATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCGAGAAGCTGGAAAGAACCCAGATGTCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACAACT
CAGCTATTAAAATGAATGAATTTATTAAATTCCTAGGCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACA
TGATATGTACTCACTGATAAGTGGATATTAGCCCAGATACTTAGAATACC
CAAGATATAACATA
NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAACACTTCGTGTAACCTAT
TTCTTCCTTTCCCTTTCACTGGGCTCCAGGGATTGAACTTGCATCTCCAT
GGTTATCTAGCAGTGCCCTTTACCTGATGAAGCATCTTGCGGGCCCTCCA
TGGTATCCTTGCAAGTCACTTGGTCCTCAAGAACTTTGTGACACTAAAAT
TCTCAACACTGGGCTCAATTCAGGCATATTTAGTGTAAGAAACTCTTTCA
TTTGTATAGTTAGTCCTTAGCACAATAGAATTTAATGAAGATCTTAGCTG
ATAGGTTGTAAGGTTTTGCTCTGTATTCAGTAGTGTCTCTCTGTTGTGTA
GAGTTCTGAAAATAGGCTGTCTCTTATTCACTCAAATGTTGCTGCAGTTC
CCACTCATACTTACTCAAATGTTGGGGTATTCCCTAATTTTATTACTCAT
TCTAATATTATTAAGAATATTTACATCTTTTATGTATATGTGTGCATGAA
AATTCATGTAAAATACAGTGATCAAGAAATTTCTTGTTTCTTAAGGGACT
CAGCTCTGCAAAATGAAATTTTTTTCTGCAAACTGGTTTATGACAAGATG
CTTTTGCTAAAGCAGATTAATGGGAAGAAGTTTTTGCTGAAAAGAAAACA
CAAGGTGGTTTTCTTAAATGTTTCTTGGAAAAAGGGCATGGGAAGGTTTG
GTACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_c04.g1 MSMg01no497_c04.g1 CHROMAT_FILE:
MSMg01no497_c04.g1 PHD_FILE: MSMg01no497_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:42 2005
         (490 letters)



>mm_chr2_100642431_100643319
          Length = 889

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggaacacttcgtgtaacctatttcttcctttccctttcactgggctccagggattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaaggaacacttcgtgtaacctatttcttcctttccctttcactgggctccagggattga 630

                                                                       
Query: 61  acttgcatctccatggttatctagcagtgccctttacctgatgaagcatcttgcgggccc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 629 acttgcatctccatggttatctagcagtg-cctttacctgatgaagcatcttgcgggccc 571

                                                                       
Query: 121 tccatggtatccttgcaagtcacttggtcctcaagaactttgtgacactaaaattctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tccatggtatccttgcaagtcacttggtcctcaagaactttgtgacactaaaattctcaa 511

                                                                       
Query: 181 cactgggctcaattcaggcatatttagtgtaagaaactctttcatttgtatagttagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cactgggctcaattcaggcatatttagtgtaagaaactctttcatttgtatagttagtcc 451

                                                                       
Query: 241 ttagcacaatagaatttaatgaagatcttagctgataggttgtaaggttttgctctgtat 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 ttagcacaatagaatttaatgaagatcttagctgataggctgtaaggttttgctctgtat 391

                                                                       
Query: 301 tcagtagtgtctctctgttgtgtagagttctgaaaataggctgtctcttattcactcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcagtagtgtctctctgttgtgtagagttctgaaaataggctgtctcttattcactcaaa 331

                                                                       
Query: 361 tgttgctgcagttcccactcatacttactcaaatgttggggtattccctaattttattac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgttgctgcagttcccactcatacttactcaaatgttggggtattccctaattttattac 271

                                                                       
Query: 421 tcattctaatattattaagaatatttacatcttttatgtatatgtgtgcatgaaaattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcattctaatattattaagaatatttacatcttttatgtatatgtgtgcatgaaaattca 211

                     
Query: 481 tgtaaaatac 490
           ||||||||||
Sbjct: 210 tgtaaaatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 889
Length adjustment: 10
Effective length of query: 480
Effective length of database: 879
Effective search space:   421920
Effective search space used:   421920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)