BAC Information

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BAC

Clone NameMSMg01-497C07
Chromosome2 (Build37)
Map Location 119,483,029 - 119,632,557
singlet/doubletdoublet
Overlap geneNdufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3
Upstream genePak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1
Downstream gene6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497C07.T7 (MSMg01no497_c07.b1)MSMg01-497C07.TJ (MSMg01no497_c07.g1)
ACCAG573782AG573783
length741748
length of high quality
(start - end)
323 (335 - 657)663 (79 - 741)
definitionCHROMAT_FILE: MSMg01no497_c07.b1 PHD_FILE: MSMg01no497_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:43 2005CHROMAT_FILE: MSMg01no497_c07.g1 PHD_FILE: MSMg01no497_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,483,029 - 119,483,351)(119,631,947 - 119,632,557)
sequence
ATGGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGCTATTTCAAGTATAATAGAAAGCCAGGCGTGGTGG
CGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGACAGGTGGATTTCTG
AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGGCAAGACT
ACACAGAGAAACCCTGTCTAGAAAAACCAAAAAAAAAAAAAAAAAAAAAA
AAAAAATTTTTTAAAGGTAAGTTAATAGAAGAAGACAGTTCAAGGCCTGC
ACAGGCAACTTAGTGATACCTTACTTTTTTTTTAAAAATAAAGCTCTGGG
CTGGGCTGTGAAGTGTTCTCTTGGCAAGCAAGGGCTTCAGCCTGGCTCCA
ACCCTTGTATGGAGTGACGGCGGGAGGATGCTGGCTACTTGTACCACAGA
AAAAAGCCAACTCTGAAGACTGGTTTTTTTACTGAGACAGGAACATAGCT
CAGTGGTAGAGCGTCTGCCAAACATTCACACACCCCTCCTCACTCACATA
CAAATGTATTGGCAACTGAGCTAACATACTGTGTTGGATAGTTTTATGCC
AACTTGCCTCAACTTACAGTCACCAGAGGGGAGGGAACAGCAACTAGGAA
ACTACCCCCCCTAGATCAGGCTGTAGGCAAGCCTGTGGAGCATGGGGCAG
GGCCCAGGCCACTGTGGGTGGGGCCATCCCTGGGCTGGGGG
NNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTATAGCCAAGAATATCCT
TGAACTGCCCAGAGTACTGGGATAGGAAGTGACGCGATGCCTGGTTTTAG
GTGGTGCTGGGGAGGGAATCCAGGGCTTCCTACATGCTAAGCAAGCACTC
TACCAACTGAGCTACATCTCCACAACACTCTATCCAGAACCCGGGAAGAG
CTGGGTCTCAGGAAGGAGCCTTTGGCCTGTGGGCTTACGGTGCATGGATG
TGAAAAATGCTGACTGCTCCTTATTACTACCCCCAGTGGCTGTCATCAGA
CACAGAGGTACACACATCACACATAGCAAGTCTACCTTTGGAAGGATGGG
CCAGGGAAGAGGCCCGTTCAGGCCTTTGACTCAGACTTCGAGCAGCCAGG
GCAAGACATTCTGAATGTACAGTTTTATGTGGCAGTAAATGAACCAGGTA
AGCTTGTCCCTTAGCCCTGAAGACTCTGCCCTTGGGACAAAGGGCTGTGG
CCAGGGTGAAGCCAGGAGAGGGCCCATCTTGTCTAGGCGACATGATTAGA
AGAGTTTCAAAGGTTCTTACTAAAGGACTGGAATACATAGACACAGAGTA
TTTGCTTAGCACGTGCAAAGCTCTGGGTCTATTCCCAGCACAGAAAAACA
AACAAACAAACAAACAAACTAACAGACAGACAGACAAACTTCGCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_c07.b1 MSMg01no497_c07.b1 CHROMAT_FILE:
MSMg01no497_c07.b1 PHD_FILE: MSMg01no497_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:43 2005
         (323 letters)



>mm_chr2_119482829_119483551
          Length = 723

 Score =  625 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaataaagctctgggctgggctgtgaagtgttctcttggcaagcaagggcttcagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaataaagctctgggctgggctgtgaagtgttctcttggcaagcaagggcttcagcctg 260

                                                                       
Query: 61  gctccaacccttgtatggagtgacggcgggaggatgctggctacttgtaccacagaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctccaacccttgtatggagtgacggcgggaggatgctggctacttgtaccacagaaaaa 320

                                                                       
Query: 121 agccaactctgaagactggtttttttactgagacaggaacatagctcagtggtagagcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaactctgaagactggtttttttactgagacaggaacatagctcagtggtagagcgt 380

                                                                       
Query: 181 ctgccaaacattcacacacccctcctcactcacatacaaatgtattggcaactgagctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgccaaacattcacacacccctcctcactcacatacaaatgtattggcaactgagctaa 440

                                                                       
Query: 241 catactgtgttggatagttttatgccaacttgcctcaacttacagtcaccagaggggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catactgtgttggatagttttatgccaacttgcctcaacttacagtcaccagaggggagg 500

                                  
Query: 301 gaacagcaactaggaaactaccc 323
           |||||||||||||||||||||||
Sbjct: 501 gaacagcaactaggaaactaccc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no497_c07.g1 MSMg01no497_c07.g1 CHROMAT_FILE:
MSMg01no497_c07.g1 PHD_FILE: MSMg01no497_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:43 2005
         (663 letters)



>mm_chr2_119631947_119633009
          Length = 1063

 Score = 1151 bits (595), Expect = 0.0
 Identities = 607/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctatagccaagaatatccttgaactgcccagagtactgggataggaagtgacgcgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 attctatagccaagaatatccttgaactgcccagagtactgggataggaagtgacgcgat 552

                                                                       
Query: 61  gcctggttttaggtggtgctggggagggaatccagggcttcctacatgctaagcaagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcctggttttaggtggtgctggggagggaatccagggcttcctacatgctaagcaagcac 492

                                                                       
Query: 121 tctaccaactgagctacatctccacaacactctatccagaacccgggaagagctgggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tctaccaactgagctacatctccacaacactctatccagaacccgggaagagctgggtct 432

                                                                       
Query: 181 caggaaggagcctttggcctgtgggcttacggtgcatggatgtgaaaaatgctgactgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caggaaggagcctttggcctgtgggcttacggtgcatggatgtgaaaaatgctgactgct 372

                                                                       
Query: 241 ccttattactacccccagtggctgtcatcagacacagaggtacacacatcacacatagca 300
           ||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccccaccactacccccagtggctgtcatcagacacagaggtacacacatcacacatagca 312

                                                                       
Query: 301 agtctacctttggaaggatgggccagggaagaggcccgttcaggcctttgactcagactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtctacctttggaaggatgggccagggaagaggcccgttcaggcctttgactcagactt 252

                                                                       
Query: 361 cgagcagccagggcaagacattctgaatgtacagttttatgtggcagtaaatgaaccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cgagcagccagggcaagacattctgaatgtacagttttatgtggcagtaaatgaaccagg 192

                                                                       
Query: 421 taagcttgtcccttagccctgaagactctgcccttgggacaaagggctgtggccagggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 taagcttgtcccttagccctgaagactctgcccttgggacaaagggctgtggccagggtg 132

                                                                       
Query: 481 aagccaggagagggcccatcttgtctaggcgacatgattagaagagtttcaaaggttctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagccaggagagggcccatcttgtctaggcgacatgattagaagagtttcaaaggttctt 72

                                                                       
Query: 541 actaaaggactggaatacatagacacagagtatttgcttagcacgtgcaaagctctgggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  actaaaggactggaatacatagacacagagtatttgcttagcacgtgcaaagctctgggt 12

                      
Query: 601 ctattcccagc 611
           |||||||||||
Sbjct: 11  ctattcccagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)