BAC Information

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BAC

Clone NameMSMg01-497F02
Chromosome2 (Build37)
Map Location 12,719,213 - 12,719,833
singlet/doubletsinglet
Overlap geneLOC100040837
Upstream geneEG635919, LOC667247, Itga8, 2310047O13Rik
Downstream genePter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F02.T7 (MSMg01no497_f02.b1)MSMg01-497F02.TJ (MSMg01no497_f02.g1)
ACCAG573915AG573916
length748745
length of high quality
(start - end)
625 (51 - 675)541 (80 - 620)
definitionCHROMAT_FILE: MSMg01no497_f02.b1 PHD_FILE: MSMg01no497_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005CHROMAT_FILE: MSMg01no497_f02.g1 PHD_FILE: MSMg01no497_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGTGTTTTTAAGAGAGAAAGAATGCTTTCCCTTCTGATG
GCTCGATTCCCCTTTGCTTGTGAGATCTTCAATTGAGCAATTGACAGATC
ATGCTTTTCAAAGCATTTTGAGCTGGCTTGTTGACCCATTGAAGCATTCA
TGAACAGGAAAGCAGATACTCTGGGGTCAGGCTCAGCCCCTGGCACTGGT
TTATATCAATGAGGCAAACGGAGGAGGCAGCATTTGGCTCAATGATTTCA
CTGCAGCTGCTACATCATACATGCCAATGTGAAGCTGAGGCACTAATTGG
AAGTGGAATAAACTAAAGAAATCTTGGTTCAAATGGCAGCTATATTTTTC
AAAGAGAAGATTTCAGTTGAAATGCCAAAGGAGACAGTTAGCCAAAACAT
TTGTCTATGGAGCTTTCTCTTCTCAATTTTTCTCAGATCTACAGCTGTGT
GCTAAGCAAGGCATGTCTTGAGAACACATGCCATGGGTAAACCAAGATGC
TTATTTTCATCAATAGCAGATCTGATTGAACTCACAACAAATAGTTCAAT
TACCATGAGTACTAATAGGCTAATTAATTTGGATGATAACAAATAAAAGA
GGGTGTGGGCGAACTGAGCTAATAGGAAATGGTATCAGATCAGGAGTTGA
GCTAGGCAGTGCCATGAGCTCTCAGTTTAGAGAACATAAGAGTGAGAN
TAATCCATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACGAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGTCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAATGAAT
GAATTTATGAAATTCCTAGCCAAATGAATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAAT
TTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f02.b1 MSMg01no497_f02.b1 CHROMAT_FILE:
MSMg01no497_f02.b1 PHD_FILE: MSMg01no497_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:58 2005
         (625 letters)



>mm_chr2_12719009_12720033
          Length = 1025

 Score = 1170 bits (605), Expect = 0.0
 Identities = 617/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtgtttttaagagagaaagaatgctttcccttctgatggctcgattcccctt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gaattccagtgcttttaagagagaaagaatgctttcccttctgatggctcgattcccctt 766

                                                                       
Query: 65  tgcttgtgagatcttcaattgagcaattgacagatcatgcttttcaaagcattttgagct 124
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 765 tgcttgtgaggtcttcaattgagcaatagacagatcatgcttttcaaagcattttgagct 706

                                                                       
Query: 125 ggcttgttgacccattgaagcattcatgaacaggaaagcagatactctggggtcaggctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ggcttgttgacccattgaagcattcatgaacaggaaagcagatactctggggtcaggctc 646

                                                                       
Query: 185 agcccctggcactggtttatatcaatgaggcaaacggaggaggcagcatttggctcaatg 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 645 agcccctggcactggtttatatcaatgaggcaaatggaggaggcagcatttggctcaatg 586

                                                                       
Query: 245 atttcactgcagctgctacatcatacatgccaatgtgaagctgaggcactaattggaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atttcactgcagctgctacatcatacatgccaatgtgaagctgaggcactaattggaagt 526

                                                                       
Query: 305 ggaataaactaaagaaatcttggttcaaatggcagctatatttttcaaagagaagatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaataaactaaagaaatcttggttcaaatggcagctatatttttcaaagagaagatttc 466

                                                                       
Query: 365 agttgaaatgccaaaggagacagttagccaaaacatttgtctatggagctttctcttctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agttgaaatgccaaaggagacagttagccaaaacatttgtctatggagctttctcttctc 406

                                                                       
Query: 425 aatttttctcagatctacagctgtgtgctaagcaaggcatgtcttgagaacacatgccat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aatttttctcagatctacagctgtgtgctaagcaaggcatgtcttgagaacacatgccat 346

                                                                       
Query: 485 gggtaaaccaagatgcttattttcatcaatagcagatctgattgaactcacaacaaatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gggtaaaccaagatgcttattttcatcaatagcagatctgattgaactcacaacaaatag 286

                                                                       
Query: 545 ttcaattaccatgagtactaataggctaattaatttggatgataacaaataaaagagggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttcaattaccatgagtactaataggctaattaatttggatgataacaaataaaagagggt 226

                                
Query: 605 gtgggcgaactgagctaatag 625
           |||||||||||||||||||||
Sbjct: 225 gtgggcgaactgagctaatag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)