BAC Information

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BAC

Clone NameMSMg01-497F21
Chromosome2 (Build37)
Map Location 178,280,457 - 178,460,752
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F21.T7 (MSMg01no497_f21.b1)MSMg01-497F21.TJ (MSMg01no497_f21.g1)
ACCAG573953AG573954
length762771
length of high quality
(start - end)		519 (71 - 589)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no497_f21.b1 PHD_FILE: MSMg01no497_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:02 2005CHROMAT_FILE: MSMg01no497_f21.g1 PHD_FILE: MSMg01no497_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,280,457 - 178,280,975)(178,460,271 - 178,460,752)
sequence
TTAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCATTCTCCGTTCTCACTCAGCTGTCCCACAGACTGGCAGC
CTGGCGGCCTGGCGGTAAAACGTCTGCTTAATATTCCATTTGTAAGAGGA
TGTGCAGCTCCGACTCATGCTCACCAAGCGGCTTGTCAAGAGCAACCTGA
AGTAAATAACAAAGGAAGCCAGCAAGAGCCACCCATCAAGTGTCCTACAC
TGTCACCTGCCAGAAGCCACTTGGCAGAGAGCATCCCCCGCACTGCACCC
CATGCAGGGATCTCTGAGTCACTAAGATGCCCACAGTAATCTGCAATCTG
CTCCAGAGAGCCCAGGGGCTCCTCTGCCTTGTTAAGCCTGGCAGTGGTTT
TGTTATTCTCAGCTCCCAGGACTGAGGCTCAACAACAAGGGGCAGCTGTC
TGTGAACACCAGGCAGATGCATCCGATCACACGGACTGCTGACCTCAGCT
AAAACGTGAGATGAAAATTACTTACCTGTCACCACTGAGACGCCATCAAA
ACCATGTTGTGGACACCCGATCTGCTTATCTGGAAGAGGTTCCGAGGAAG
AGTGGACCGTGACACCCCTAATAGACCTCTGTGTGTCCCAAGATGCTTGC
TACTCAGCTCAAGAGCCGTGACTGACTGCTGTAGTATTTATTAATGGNCA
GCAGCCACAAAGCCCATGTACTACAACAGTGTATTATGGGACCAAGCATT
GTTGACTGCTTA

NAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCAGGGTGGGAACTTAAT
AGACAGATGACCAGGATCAGAAATGTCCGTATGGGCAAGCAAAACTCTTC
ACAGCAGACTTATCTGAGTTCCTGGGGCCTGGTGAGAAGCTCATTTTAGC
CCCTCCTCTTATGGCCAAAGGAGGCCCAGACACCCAGGAAGCTCAGAGAG
TTGTAAGCTTCAGAGCTGAGGAAACAGGGTGGGTGAGAGCACATGTTTTA
CAACAAGACCCTGGTTTGAATTCCCAGCACCATGGAAAAGTTGAATATGG
TTACAATTCCTGAAACTCAGTGTTGGGGGAAGCATCAAGAAGATTTCAGG
AGCAGAAATAGAGAGACTTTCAGAGTTAATGAGAGACTCTGTCTCAAAAC
ATAAGGTAGAGATCGATAGTGGAAGACTCAAGCCTTCATCTGTCCTCCTC
ATGAATACTCACCTGCATATCACACACACATGCACACGCACATGCACACA
CACACATGTATACACACACAAACATACTCACACACATATATACATATGCA
TAAACAAAAAGCCACACATATGCATATACATATATGCCACACATGTACAC
ATCCATACATATATGCACATACATACACACACAATACATTCTCACCCACA
CACACACATATATATACACACACGTGGCGCCCCCTGAACACACACCAGCA
CACCTGCTCAGAACACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f21.b1 MSMg01no497_f21.b1 CHROMAT_FILE:
MSMg01no497_f21.b1 PHD_FILE: MSMg01no497_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:02 2005
         (519 letters)



>mm_chr2_178280257_178281175
          Length = 919

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcactcagctgtcccacagactggcagcctggcggcctggcggtaaaacgtctgctta 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcactcagctgtcccacagcctggcagcctggcggcctggcggtaaaacgtctgctta 260

                                                                       
Query: 61  atattccatttgtaagaggatgtgcagctccgactcatgctcaccaagcggcttgtcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattccatttgtaagaggatgtgcagctccgactcatgctcaccaagcggcttgtcaag 320

                                                                       
Query: 121 agcaacctgaagtaaataacaaaggaagccagcaagagccacccatcaagtgtcctacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaacctgaagtaaataacaaaggaagccagcaagagccacccatcaagtgtcctacac 380

                                                                       
Query: 181 tgtcacctgccagaagccacttggcagagagcatcccccgcactgcaccccatgcaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcacctgccagaagccacttggcagagagcatcccccgcactgcaccccatgcaggga 440

                                                                       
Query: 241 tctctgagtcactaagatgcccacagtaatctgcaatctgctccagagagcccaggggct 300
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tctctgagtcactaagatgtccacagtagtctgcaatctgctccagagagcccaggggct 500

                                                                       
Query: 301 cctctgccttgttaagcctggcagtggttttgttattctcagctcccaggactgaggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctgccttgttaagcctggcagtggttttgttattctcagctcccaggactgaggctc 560

                                                                       
Query: 361 aacaacaaggggcagctgtctgtgaacaccaggcagatgcatccgatcacacggactgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaacaaggggcagctgtctgtgaacaccaggcagatgcatccgatcacacggactgct 620

                                                                       
Query: 421 gacctcagctaaaacgtgagatgaaaattacttacctgtcaccactgagacgccatcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacctcagctaaaacgtgagatgaaaattacttacctgtcaccactgagacgccatcaaa 680

                                                  
Query: 481 accatgttgtggacacccgatctgcttatctggaagagg 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accatgttgtggacacccgatctgcttatctggaagagg 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_f21.g1 MSMg01no497_f21.g1 CHROMAT_FILE:
MSMg01no497_f21.g1 PHD_FILE: MSMg01no497_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:02 2005
         (482 letters)



>mm_chr2_178460213_178461094
          Length = 882

 Score =  924 bits (478), Expect = 0.0
 Identities = 481/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcccagggtgggaacttaatagacagatgaccaggatcagaaatgtccgtatgggcaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 540 tctcccagggtgggaacttaatagacagatgaccaggatcagtaatgtccgtatgggcaa 481

                                                                       
Query: 61  gcaaaactcttcacagcagacttatctgagttcctggggcctggtgagaagctcatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcaaaactcttcacagcagacttatctgagttcctggggcctggtgagaagctcatttta 421

                                                                       
Query: 121 gcccctcctcttatggccaaaggaggcccagacacccaggaagctcagagagttgtaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcccctcctcttatggccaaaggaggcccagacacccaggaagctcagagagttgtaagc 361

                                                                       
Query: 181 ttcagagctgaggaaacagggtgggtgagagcacatgttttacaacaagaccctggtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcagagctgaggaaacagggtgggtgagagcacatgttttacaacaagaccctggtttg 301

                                                                       
Query: 241 aattcccagcaccatggaaaagttgaatatggttacaattcctgaaactcagtgttgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aattcccagcaccatggaaaagttgaatatggttacaattcctgaaactcagtgttgggg 241

                                                                       
Query: 301 gaagcatcaagaagatttcaggagcagaaatagagagactttcagagttaatgagagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaagcatcaagaagatttcaggagcagaaatagagagactttcagagttaatgagagact 181

                                                                       
Query: 361 ctgtctcaaaacataaggtagagatcgatagtggaagactcaagccttcatctgtcctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctgtctcaaaacataaggtagagatcgatagtggaagactcaagccttcatctgtcctcc 121

                                                                       
Query: 421 tcatgaatactcacctgcatatcacacacacatgcacacgcacatgcacacacacacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tcatgaatactcacctgcatatcacacacacatgcacacgcacatgcacacacacacatg 61

             
Query: 481 ta 482
           ||
Sbjct: 60  ta 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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