BAC Information

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BAC

Clone NameMSMg01-497M15
Chromosome2 (Build37)
Map Location 154,382,448 - 154,382,634
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik
Downstream geneE2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497M15.T7 (MSMg01no497_m15.b1)MSMg01-497M15.TJ (MSMg01no497_m15.g1)
ACCAG574271AG574272
length741745
length of high quality
(start - end)
312 (327 - 638)195 (78 - 272)
definitionCHROMAT_FILE: MSMg01no497_m15.b1 PHD_FILE: MSMg01no497_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:36 2005CHROMAT_FILE: MSMg01no497_m15.g1 PHD_FILE: MSMg01no497_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAAGAGGATC
CGCGGAATTCCCAAGTTCTCAGTCTCAGGGATACAGCTTACCAGCTACCT
GGTGTATTTGCCCTGAGCCTCAGTTCCATATCTGTGAAGTGCAGATGGTC
TAAGACCATCATGAATGGAATTTGTTGCTGCTTGGAGTTTGCTTAGCACA
GTAATCTGCACATAGTGAACTCCCATTAAACTGTCCCTAAGGTTCTCACT
CTATGCTGTTGTGCCCTGAGTCCAATTGCAAAGCCCGCTGCAACTCGCCA
AGAGTCTTTTTATTGTTTCTATTTTGAACCCGGTTCACCCACCTAGCACT
CACTGCGTGAATGTTGGCAAGCAACCCTGAGTCCAGAAAACATTGGTTTA
TATACAGTACAGGAATAGTGTGAATATTTACAGAGAAGGGGAATAGAGGG
TGGAATAGTACTGAAGCGTGAGGGTGGGTTAATGGGTGCCTGTTCAGGGA
CTAATTTTATGGCCAGTCGTAACTGTCTGTGACCTGACCTCTGTTTACCT
TTTACTTTTTCCATGGTCTCCCTTGAGCTCAAGGACAGGCACCTGGAGAG
TTATCAGGAGAAGTGTTGGGTGTTGGTTTTTGGAGACCCAGAGGCAGGGA
GAATGTCTCACGATAGGGGAGTGGGATGGAGGCCTGGTGCTGCANGAGGA
TGCAGCACAGAACCAGCTGTCACCAGCTGTCTGCATATCAT
NCCGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGTCAGCAGGATTCCCACCTAGAAAGCTGTTGTAAG
GACATCACAAGATCTTGTACACTACCATCACTGAGCTAGAGTAATGTCTT
AACATAAGCCCCCACCTCCAGCCTCAGATCAAACCACACTTCCCACTCCC
TATTCTGTACACTCCAGGAAGGGTTGCTTGCTTGATCCCCCATTTTTGAG
CTCTCGAGACTTCAAGCTGTACCTCCCAGTCCCTAGCTCTTCTACCCTTC
CCCCGCCCCACTATACCTCTTATGTCCCTGACTCTCACATTCTGCCCCCC
CAACACACACACACACACACACACACACACACTGTGGGACCCAAAGGGAA
GAAACCACTCACCATTTTTGTCTGCTCTTCGGAAAACCTAGGGGACAAAG
GGAAATAAGTGGGCACTGTGAGGGGAGCCAGGGAGATAGGGGTGCCCCTC
CCAAGCCAGTGGGGCTCCAGCTTGGCAGCCAGCCCCCCTGCATCGCCTTC
ACCCTGCTCAGGGAAGTCCTGCAGGAGTCTCCAGCAAGGTAGCACAGGAA
GCTCGCACAGCAAGCCCTAGTGCTGACTCCCTCCTGCTGTAAGGCTGGCT
TCGCGGTGGGGGGGTGCTCCTGGCCAGCTCTCTGTACCTTCACCTTCCAC
AGCTGGAGTCAAGCCCGAGTTGGCTCTGATGTAACAGCCTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_m15.g1 MSMg01no497_m15.g1 CHROMAT_FILE:
MSMg01no497_m15.g1 PHD_FILE: MSMg01no497_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:36 2005
         (195 letters)



>mm_chr2_154382241_154382834
          Length = 594

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/197 (93%), Gaps = 12/197 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccacctagaaagctgttgtaaggacatc--acaagatcttgtacactaccatcactgag 58
           |||||||||||||||||||||||||||||  ||||         ||||||||||||||||
Sbjct: 208 cccacctagaaagctgttgtaaggacatcttacaa---------cactaccatcactgag 258

                                                                       
Query: 59  ctagagtaatgtcttaacataagcccccacctccagcctcagatcaaaccacacttccca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctagagtaatgtcttaacataagcccccacctccagcctcagatcaaaccacacttccca 318

                                                                       
Query: 119 ctccctattctgtacactccaggaagggttgcttgcttgatcccccatttttgagctctc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 319 ctccctattctgtacactccaggaagggttgcttgcttgatcccccatttt-gagctctc 377

                            
Query: 179 gagacttcaagctgtac 195
           |||||||||||||||||
Sbjct: 378 gagacttcaagctgtac 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 594
Length adjustment: 8
Effective length of query: 187
Effective length of database: 586
Effective search space:   109582
Effective search space used:   109582
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)