BAC Information

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BAC

Clone NameMSMg01-497N01
Chromosome2 (Build37)
Map Location 20,213,442 - 20,340,133
singlet/doubletdoublet
Overlap geneEtl4
Upstream geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497N01.T7 (MSMg01no497_n01.b1)MSMg01-497N01.TJ (MSMg01no497_n01.g1)
ACCAG574291AG574292
length755756
length of high quality
(start - end)
604 (76 - 679)640 (77 - 716)
definitionCHROMAT_FILE: MSMg01no497_n01.b1 PHD_FILE: MSMg01no497_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:38 2005CHROMAT_FILE: MSMg01no497_n01.g1 PHD_FILE: MSMg01no497_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,213,442 - 20,214,045)(20,339,648 - 20,340,133)
sequence
CACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGAGCGCGG
AATTCACTTTCATGCAACAGAAAACTGGCATCTTTTTGGGTGTGGAATGT
GGTAGAAGGGCGAAAAAAGTAAAGAAATTGACCCATTACCACATGGAATG
TGGTTTGGGTTGGTCTGGAGGGGGAAGAGTGGCCTGTGTAATTTATACAC
CGTTGGGAAAGCACTAGAGGCAGCCTTTGATAAGCAGAGCAGAACATATC
CAGAGATTTTTTTTTTAATCCCCAACTAGATAATATATTTGAAAAACACA
CTTTGAACTTAGTTTGCTATTTTTTGGAGGCAAAAAAGTGTGTTTTGGTT
TTCAGTATTATAGATAATCACAATGCACAAAGTGAGAGCTGTTCTCTGTC
CCATCCATGTGTGCCTCATGCCTCACAGTTATGTGACATCTTTAATCCTC
ATAGTTGTGCCAAAGGGGAACGTTTTGTTACCTACCCATTAGAGAACAGG
CTCTGCATGGCTGATGTCGTGCTTGCTTCAAGGTCATGCAGTTGTTCAGT
GGAAAGCTGAGCATTTGAACAGAGCTCTGGAACAGAGAATATCTGACTAC
CATTTAGCCTGTGGTTAGTGCTTCTGGCTTCTGTTGCAGTGTCTGGCATT
ATGGAAGCTGATGGAACTCTTGCTTTCTGAACTTGAGAGTGTCACAGAAA
TATAACGATGGTTCAGGCTCAACTAGATGATCCCAAGTTCAATATGCCTT
GCTCN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACTTCTAAGGCTACACACAG
AAAGTCTGTCTTTAGAAAACAACAACAACAACAACAACAACAACAACAAC
AACAACAAGACCAGCAATGCAAGTGAAGAACAACCCTGAGCCCTTAAGAG
TTTCAGAATGAAAAACTCTGATTATATACGTTAAAGACATTTAAATTATT
TTTACTGAGATTTATTTATTTATTTATTTAGTTAGTTAGTTTTTTGAGAC
AGGGTTTCTCTGTGTAACCTTGGCTGTCCTAGAACTCACTTTGTAGACCA
GGCTGGCCTCGAACTCAGAAATCCGCCTGCCACTGCCTCCCAAGTGCTGG
GACTAAAGGTGTGCGCTACCAAGCCTGGCTTTATTTTTACTGAGACATAT
TCACATACCACTCAGAATTATGAAATCTATACAGCACCAATGGCCAAATG
ACACCTACACATGTCCTCTGAAACATTTAATGCTGGGATCTTGGGCAACG
AGGGCTACCCTTCCTCCTCATCAAAGGAAGATGGTGATCTCAATGAGAGG
ATTTATCTAACATCTCCGACTAAATAAAACAAACAAGAGGCAAAGACTGC
CAGTCCTTGGTCCTGTGTCTCCTTTATTATCCCCACTTATTCCTCTACCA
CACCGCTGCAAGGCCTCTAATTGAAAACATAAATTAAGCTCCCTAATAAC
AAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_n01.b1 MSMg01no497_n01.b1 CHROMAT_FILE:
MSMg01no497_n01.b1 PHD_FILE: MSMg01no497_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:38 2005
         (604 letters)



>mm_chr2_20213242_20214245
          Length = 1004

 Score = 1137 bits (588), Expect = 0.0
 Identities = 600/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcatctttttgggtgtggaatgtggtagaagggcgaaaaaagtaaagaaattgaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcatctttttgggtgtggaatgtggtagaagggcgaaaaaagtaaagaaattgaccca 260

                                                                       
Query: 61  ttaccacatggaatgtggtttgggttggtctggagggggaagagtggcctgtgtaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaccacatggaatgtggtttgggttggtctggagggggaagagtggcctgtgtaattta 320

                                                                       
Query: 121 tacaccgttgggaaagcactagaggcagcctttgataagcagagcagaacatatccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaccgttgggaaagcactagaggcagcctttgataagcagagcagaacatatccagag 380

                                                                       
Query: 181 attttttttttaatccccaactagataatatatttgaaaaacacactttgaacttagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttttttttaatccccaactagataatatatttgaaaaacacactttgaacttagttt 440

                                                                       
Query: 241 gctattttttggaggcaaaaaagtgtgttttggttttcagtattatagataatcacaatg 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagggtttggaggcaaaaaagtgtgttttggttttcagtattatagataatcacaatg 500

                                                                       
Query: 301 cacaaagtgagagctgttctctgtcccatccatgtgtgcctcatgcctcacagttatgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 cacaaagtgagagctgttctctgtcccatccatgtgtgcctcatgcctaacagttatgtg 560

                                                                       
Query: 361 acatctttaatcctcatagttgtgccaaaggggaacgttttgttacctacccattagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatctttaatcctcatagttgtgccaaaggggaacgttttgttacctacccattagaga 620

                                                                       
Query: 421 acaggctctgcatggctgatgtcgtgcttgcttcaaggtcatgcagttgttcagtggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaggctctgcatggctgatgtcgtgcttgcttcaaggtcatgcagttgttcagtggaaa 680

                                                                       
Query: 481 gctgagcatttgaacagagctctggaacagagaatatctgactaccatttagcctgtggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgagcatttgaacagagctctggaacagagaatatctgactaccatttagcctgtggt 740

                                                                       
Query: 541 tagtgcttctggcttctgttgcagtgtctggcattatggaagctgatggaactcttgctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtgcttctggcttctgttgcagtgtctggcattatggaagctgatggaactcttgctt 800

               
Query: 601 tctg 604
           ||||
Sbjct: 801 tctg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no497_n01.g1 MSMg01no497_n01.g1 CHROMAT_FILE:
MSMg01no497_n01.g1 PHD_FILE: MSMg01no497_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:38 2005
         (640 letters)



>mm_chr2_20339094_20340133
          Length = 1040

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                        
Query: 155  ttaaagacatttaaattatttttactgagatttatttatttatttatttagttagttagt 214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 ttaaagacatttaaattatttttactgagatttatttatttatttatttagttagttagt 981

                                                                        
Query: 215  tttttgagacagggtttctctgtgtaaccttggctgtcctagaactcactttgtagacca 274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  tttttgagacagggtttctctgtgtaaccttggctgtcctagaactcactttgtagacca 921

                                                                        
Query: 275  ggctggcctcgaactcagaaatccgcctgccactgcctcccaagtgctgggactaaaggt 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  ggctggcctcgaactcagaaatccgcctgccactgcctcccaagtgctgggactaaaggt 861

                                                                        
Query: 335  gtgcgctaccaagcctggctttatttttactgagacatattcacataccactcagaatta 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  gtgcgctaccaagcctggctttatttttactgagacatattcacataccactcagaatta 801

                                                                        
Query: 395  tgaaatctatacagcaccaatggccaaatgacacctacacatgtcctctgaaacatttaa 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  tgaaatctatacagcaccaatggccaaatgacacctacacatgtcctctgaaacatttaa 741

                                                                        
Query: 455  tgctgggatcttgggcaacgagggctacccttcctcctcatcaaaggaagatggtgatct 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  tgctgggatcttgggcaacgagggctacccttcctcctcatcaaaggaagatggtgatct 681

                                                                        
Query: 515  caatgagaggatttatctaacatctccgactaaataaaacaaacaagaggcaaagactgc 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  caatgagaggatttatctaacatctccgactaaataaaacaaacaagaggcaaagactgc 621

                                                                        
Query: 575  cagtccttggtcctgtgtctcctttattatccccacttattcctctaccacaccgctgca 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620  cagtccttggtcctgtgtctcctttattatccccacttattcctctaccacaccgctgca 561

                  
Query: 635  aggcct 640
            ||||||
Sbjct: 560  aggcct 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)