Query= MSMg01no497_n19.b1 MSMg01no497_n19.b1 CHROMAT_FILE:
MSMg01no497_n19.b1 PHD_FILE: MSMg01no497_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:42 2005
(664 letters)
>mm_chr2_57931289_57932352
Length = 1064
Score = 886 bits (458), Expect = 0.0
Identities = 568/660 (86%), Gaps = 85/660 (12%)
Strand = Plus / Minus
Query: 5 gaattcattaaatattggaaagttgccagccattgtcataggttttaccttttacctgga 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcattaaaaattggaaagttgccagccattgtcataggttttaccttttacctgga 628
Query: 65 ttcaccaccaaatagaaagaaatctttgcacttattttgaagaattacctatgatatgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttcaccaccaaatagaaagaaatctttgcacttattttgaagaattacctatgatatgtt 568
Query: 125 tagacagttgtgtgtgtgtgtgtgtgtctgcgtgtctgcgtggtcgtgcacatgtgcatg 184
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 567 tagacagt--tgtgtgtgtgtgtgtgtctgcgtgtctgcgtgctcgtgcacatgtgcatg 510
Query: 185 tatatgcacacacatggaacagaattttgtgcatctcgtgctgacaccaaaccccataat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tatatgcacacacatggaacagaattttgtgcatctcgtgctgacaccaaaccccataat 450
Query: 245 atcaaaatcttcatcctctggcttctacttgtagaagccacacactcagctctgttttgc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 atcaaaatcttcatcctctggcttctacttgtagaagccacacactcagctctgctttgc 390
Query: 305 tatgttcataataaagaacagatttttttttccattttttattaggtatttagctcattt 364
|||||||| ||||||||||
Sbjct: 389 tatgttcacaataaagaac----------------------------------------- 371
Query: 365 acatttccaatgctataccaaaagtcccccatattaaagaatagatttatgttaaaatca 424
||||||||||||||||||
Sbjct: 370 ------------------------------------------agatttatgttaaaatca 353
Query: 425 tactctgctgtaaatcctggcccttgccaaacagataacctttgcaactcacttccagtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tactctgctgtaaatcctggcccttgccaaacagataacctttgcaactcacttccagtc 293
Query: 485 tttgaactctagtattttcatttataaaattctagaagaaaacggctgttcagaaagtct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttgaactctagtattttcatttataaaattctagaagaaaacggctgttcagaaagtct 233
Query: 545 attgggaagattaaggacttgtgtgaaaagagctttgagtaatgattggttcacagtaag 604
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 232 attggaaagattaaggacttgtgtgaaaagagctttgagtaatgattggctcacagtaag 173
Query: 605 tgcttctttatgtattcttatcactatttccattattttgagaagtttacttgtctcatg 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cgcttctttatgtattcttatcactatttccattattttgagaagtttacttgtctcatg 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_n19.g1 MSMg01no497_n19.g1 CHROMAT_FILE:
MSMg01no497_n19.g1 PHD_FILE: MSMg01no497_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:42 2005
(257 letters)
>mm_chr2_57764459_57765115
Length = 657
Score = 485 bits (251), Expect = e-142
Identities = 254/255 (99%)
Strand = Plus / Plus
Query: 1 atagattgtctctgaatatttaagctaataaaacacaaaactattctccagttatcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagattgtctctgaatatttaagctaataaaacacaaaactattctccagttatcaatg 260
Query: 61 tagtaaaatctaaattgtgaactgccctggtagctaggacagatattttcactcataaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtaaaatctaaattgtgaactgccctggtagctaggacagatattttcactcataaac 320
Query: 121 cggggaagctaatttagcctcaatctccatctcatgacgtagggaatccctactttcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggggaagctaatttagcctcaatctccatctcatgacgtagggaatccctactttcctt 380
Query: 181 aagcagacctatctccaaaggtttttgttggattgtttgattgattgtttggttgtttgg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcagacctatctccgaaggtttttgttggattgtttgattgattgtttggttgtttgg 440
Query: 241 ttagttgtttgtttg 255
|||||||||||||||
Sbjct: 441 ttagttgtttgtttg 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
