BAC Information

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BAC

Clone NameMSMg01-498C09
Chromosome2 (Build37)
Map Location 127,662,519 - 127,663,082
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1
Downstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498C09.T7 (MSMg01no498_c09.b1)MSMg01-498C09.TJ (MSMg01no498_c09.g1)
ACCAG574544AG574545
length754771
length of high quality
(start - end)
503 (78 - 580)572 (82 - 653)
definitionCHROMAT_FILE: MSMg01no498_c09.b1 PHD_FILE: MSMg01no498_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:04 2005CHROMAT_FILE: MSMg01no498_c09.g1 PHD_FILE: MSMg01no498_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCAAGGCCCTGACCTAAGCATAGTACAAGCAATATACAGCAA
ACCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGACGCAATCCCAC
TAAAATCAGGGACTAGACAAAGCTATCCACTCTCTCCATATCTATTCAAT
ATAGTACTTGAAGTTCTAGTTAGAGCAATTAGACAACAAAAGGAGGTCAA
AGCGATACAAATTGGAAAGGAAGAAGTCAAAGTATCACTATTTGTAGATA
ATATGATTTTATACTTAAGTGACCCCTAATATTCCACCAGAGAACTCCTA
AAGCTGATAAACAACTTCAGCAAAGTGGCTGGATATAAAATTAACTCAAA
AAAAAAATCAGTAGCCTTCCTCTACTCAAAGGATAAACAGTCTAAGAAAG
AAATTAGGGAAAGGATACCCTTCAAAATAGTCACAAATAATATTACATAC
TTTGGTGTGACTCTAACCAAGCAAGTGAAAGATCTGTATGATAAGAACTT
CAAGTCTCTGAAGAAAGAAATGGAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGTCAGGATTAATATAGTAAAAATGGCTATCTTG
CCGAAAGTAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAGATA
ATTCTCCATAGAGTTTGAAAGAGCAATTTGCATATTCATCCCTGGAATAA
CAAA
NNCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATAACCGGAATCTCA
TATATATGCATGCATATATATGAGATATGTATGTATGTGTATGCATATAT
AAAATATTTAATGTCACCAGCAACATTCTTCCAGTATCTTCCAAAGACTA
TGTAATGCACAATTCTTCAAAAACTTAGAGTGACTTGTAACAGTAGAAGG
TTCCCCCCACCCCAACTTGAGCTGAACGCAATGGAAGATAACATAGTCAT
TTGTCTTTCTAGCTTCTAGGTCTTTATATTTTTAGAAAATACATCCTGAC
TTGACACAGTGCCTCCTGCCGGCACATTGGACTTGATGCTATGATAGTGT
GGGGTCTCATTGCCTCCCTTTGGGAGAGGGGAGTGCAGTTTACCTGTGGA
AAGCAAAGAGTAGCTGGAGGAGCAGCTTCAGCAACCTCTAGCACTGCTCA
CAGATTGATTTGGGTGTTGGCCTCTGGCCATGCCAAAGGTTTTGCTTCCT
TGGAGTCAGCAGTGACGTGCTCTGTCTGATGGGCTGAATCTGGAAATTAC
CTGTACTCTTTTCAGCTGTTAGGGACAAAAGTCCTTGTGGCCACATGCTG
GCCATGGTTTTATTGTCTGGGAGCTGAAGTAAGAGGACATGAATATAATT
TGAAGGTAGCATGAGTGAGAAAAACTATCTTCTAAAGCTCTAAGAATTAA
GTGCTGATGGCGTACACGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_c09.g1 MSMg01no498_c09.g1 CHROMAT_FILE:
MSMg01no498_c09.g1 PHD_FILE: MSMg01no498_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:04 2005
         (572 letters)



>mm_chr2_127662311_127663282
          Length = 972

 Score =  949 bits (491), Expect = 0.0
 Identities = 548/577 (94%), Gaps = 18/577 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacataaccggaatctcatatatatgcatgcatatatatgagatatgtatgtatgtgta 60
           ||||||||| ||||||||||||||        |||||||||||| |||||||||||||||
Sbjct: 209 tcacataacaggaatctcatatat--------atatatatgagagatgtatgtatgtgta 260

                                                                       
Query: 61  tgcatatataaaatatttaatgtcaccagcaacattcttccagtatcttccaaagactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatatataaaatatttaatgtcaccagcaacattcttccagtatcttccaaagactat 320

                                                                       
Query: 121 gtaatgcacaattcttcaaaaacttagagtgacttgtaacagtagaaggttccccccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gtaatgcacaattcttcaaaaacttagagtgacttgtaacagtagaaggtttcccccacc 380

                                                                       
Query: 181 ccaacttgagctgaacgcaatggaagataacatagtcatttgtctttctagcttctaggt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 381 ccaacttgagctgaacgcaatggaagataacatagtcatttgtcgttctagtttctaggt 440

                                                                       
Query: 241 ctttata-----tttttagaaaatacatcctgacttgacacagtgcctcctgccggcaca 295
           ||||| |          |||||||| |||||||||||||||||| |||||||| ||||||
Sbjct: 441 ctttagaccagg-----agaaaataaatcctgacttgacacagtacctcctgctggcaca 495

                                                                       
Query: 296 ttggacttgatgctatgatagtgtggggtctcattgcctccctttgggagaggggagtgc 355
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttggacttgatgctatgattgtgtggggtctcattgcctccctttgggagaggggagtgc 555

                                                                       
Query: 356 agtttacctgtggaaagcaaagagtagctggaggagcagcttcagcaacctctagcactg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agtttacctgtggaaagcaaagagtagctggaggagcagcttcagcaacctctagcactg 615

                                                                       
Query: 416 ctcacagattgatttgggtgttggcctctggccatgccaaaggttttgcttccttggagt 475
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 616 ctcacagattgatttgggtgttggcctctggccgtgccaaaggttttgcttccttggagt 675

                                                                       
Query: 476 cagcagtgacgtgctctgtctgatgggctgaatctggaaattacctgtactcttttcagc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cagcagtgacgtgctctgtctgatgggctgaatctggaaattacctgtactcttttcagc 735

                                                
Query: 536 tgttagggacaaaagtccttgtggccacatgctggcc 572
           |||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgttagggacaaaagtccttgtggccacatgctggcc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)