BAC Information

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BAC

Clone NameMSMg01-498H14
Chromosome2 (Build37)
Map Location 150,577,131 - 150,577,703
singlet/doubletsinglet
Overlap geneEntpd6
Upstream geneC530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1
Downstream geneLOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498H14.T7 (MSMg01no498_h14.b1)MSMg01-498H14.TJ (MSMg01no498_h14.g1)
ACCAG574790AG574791
length836777
length of high quality
(start - end)
66 (47 - 112)573 (79 - 651)
definitionCHROMAT_FILE: MSMg01no498_h14.b1 PHD_FILE: MSMg01no498_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:31 2005CHROMAT_FILE: MSMg01no498_h14.g1 PHD_FILE: MSMg01no498_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTTATTCACTTTATGTCTACAGAAATTCATCCTCCCTTTGGG
GGGAGGGGCGTGTTTCTGGACAGGGTTTCTCTGTATAGCCCTGGCTATCC
TGGAACTCACTCTGTAGACCAGGCTGGCCTCTAACTCAGAAATCTACCTG
CCTCCTCCTCCCAAGTGTTGCGACCAAATGTGTGTTCCACCACCACCTAG
CTGACATTCATCTGCTTTTGTATTCGCTACTGATTTAATTTTGTTTTCCA
GCCTCCTCTTCCGATAGATTATTTTTTGCTCCCTTTTCCCCCTTCGCCCC
CTTTATTCATTATTCTTTTTTTTTCCCCTGTACTTCTATATTTCTTTGTT
TTTGCCTCCCTTTCCATATCTTCCTATCTTCCCCCAGCTTTACTGTTTCC
CGTCTTCATATATTTCCTTTATCCTGTCTGCTACCCTTTTTCCCTCCTTT
TTTCTACTATTTGTTTACATGAAATTTATCTCATCTTTTTATACTTTTTT
TATGGGTTCTTTATTCCTTTATCACTCGCTTTTTTTTCTTCTTTTTTTTT
TCGCGCATTACTTTTTTCAGTTTTTTCGTGTGTCCTTTTCTAATTATTTT
CTTCCTTTTTCCCTTTTCGGCCTTTTTCTAATTTAGCTTTTTTTTTTTTA
CCAAACTTCTTCTTTCTGGTTTCTTACATTATGTCCTATGTCTCCCTCTT
TTTACTTTTTACCTCCCCTCTACTTTCACTTCCTCCACTATTTTTTTTCT
TTTCTCACTACTTTGAAGCTCTCTTCGTGTCTTTTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTGCTCGAGGGGAGCCACA
AAGAACATAAGCTCTACAGGCTTTGTAGATGGGCAGAGGACACATCACAT
GGGAACTGGGGACAACGATGGGCAGAAGGACCCTGTGGCTGCCCTGTGTG
AGGAGAGAACAGTAGTTCTAGGCCGGGGAACTCATCCTGAGCTGGTCTGG
GTAAAACAGAAGTGGGATGACACTGTACACAGAGCAGACCTTCCTTGGTC
CCATCTCTGGTCACACTCAAACACTCTTAGGCAAGCAGCCCAGGTTAGAT
AAATGCTGCCTCTGAGCCCCAAGCCCAGAACAAGAAAATAAGACAAAACT
TTCCCCCGTTCCTGCCACCTGTAGGGCTCAGAACGGTTTTCTTGGCAGAT
GCCAAGGGGTAAGCCTCCCTTGCCAGGCCCCAGCTCCTGCCGTGCTCTGG
ATCTCACTTGGTTCCTCTGCACTTAAGAGCTACCCAATGCTCTCATGAGC
GGCTCTCATCCATCACCTGCTGTGGGTGGCTGGTACTTGCACCTCATACC
ATACCTTTGATCCTTGCCCAAGCACTCCAAGAGCACAGTGCTTCTTTTTG
CCCTGAAAACTCAGCTCCTACCCATCCCAGGCCCTTTGCGCACACACTAT
TGTCCATTCCCCGAAAGTTCAGCCATCAACTGGGCCAATTTTGTCAATTC
TGACCCTATCCTAAAACCTCTGCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_h14.g1 MSMg01no498_h14.g1 CHROMAT_FILE:
MSMg01no498_h14.g1 PHD_FILE: MSMg01no498_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:31 2005
         (573 letters)



>mm_chr2_150576931_150577903
          Length = 973

 Score = 1025 bits (530), Expect = 0.0
 Identities = 563/574 (98%), Gaps = 2/574 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtgctcgaggggagccacaaagaacataagctctacaggctttgtagatgggcagag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 773 aatgtgctcgaggggagccacaaagaacataagcactacaggctttgtagatgggcagag 714

                                                                       
Query: 61  gacacatcacatgggaactggggacaacgatgggcagaaggaccctgtggctgccctgtg 120
           || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 713 gatacatcacatgggaactggggacaacgatgggcagaaggaccttgtggctgccctgcg 654

                                                                       
Query: 121 tgaggagagaacagtagttctaggccggggaactcatcctgagctggtctgggtaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgaggagagaacagtagttctaggccggggaactcatcctgagctggtctgggtaaaaca 594

                                                                       
Query: 181 gaagtgggatgacactgtacacagagcagaccttccttggtcccatctctggtcacactc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 593 gaagtgggatgacactgtacacagagcaggccttccttggtcccatctctggtcacactc 534

                                                                       
Query: 241 aaacactcttaggcaagcagcccaggttagataaatgctgcctctgagccccaagcccag 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 533 aaacactcttaggcaagcagcccaggttagatgaatgctgcctctgagccccaggcccag 474

                                                                       
Query: 301 aacaagaaaataagacaaaactttcccccgttcctgccacctgtagggctcagaacggtt 360
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 473 agcaagaaaataagacaaaactttcccctgttcctgccacctgtagggctcagaacggtt 414

                                                                       
Query: 361 ttcttggcagatgccaaggggtaagcctcccttgccaggccccagctcctgccgtgctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttcttggcagatgccaaggggtaagcctcccttgccaggccccagctcctgccgtgctct 354

                                                                       
Query: 421 ggatctcacttggttcc-tctgcacttaagagctacccaatgctctcatgagcggctctc 479
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggatctcacttggttccat-tgcacttaagagctacccaatgctctcatgagcggctctc 295

                                                                       
Query: 480 atccatcacctgctgtgggtggctggtacttgcacctcataccatacctttgatccttgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atccatcacctgctgtgggtggctggtacttgcacctcataccatacctttgatccttgc 235

                                             
Query: 540 ccaagcactccaagagcacagtgcttctttttgc 573
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ccaagcactccaagagcacagtgcttctttttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)