BAC Information

Click to search

BAC

Clone NameMSMg01-498K20
Chromosome2 (Build37)
Map Location 131,394,616 - 131,488,035
singlet/doubletdoublet
Overlap genenone
Upstream geneOxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
Downstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498K20.T7 (MSMg01no498_k20.b1)MSMg01-498K20.TJ (MSMg01no498_k20.g1)
ACCAG574943AG574944
length782777
length of high quality
(start - end)
636 (46 - 681)590 (66 - 655)
definitionCHROMAT_FILE: MSMg01no498_k20.b1 PHD_FILE: MSMg01no498_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:49 2005CHROMAT_FILE: MSMg01no498_k20.g1 PHD_FILE: MSMg01no498_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,487,408 - 131,488,035)(131,394,616 - 131,395,205)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACCTACTAACGAAAAAAATGTGAGTGCGGGAAGGGGAAAGAGA
GAGAGAGAGAATCTAAGCTACCAAATATAATTTTTAATATCATGATCCCT
CAATGTATAGGCTTTACAGAGCAGATGCTTGGATGTTCACATATTTGCCA
TCAGCTGACATACTTAGTGCCAAATCACCTCCTGAGGAGTTTGCACTGGA
CATGACCTTCATCATGGTCATTTCTGAGTGGTAATCACTGAACCCCACTT
GAATACCCTAAGCTCTTACTGCTTCATGAGAAAGACCATCTCATGGAGCA
TTCTTTGGTATGATAGATTCAAACTCAAAGTCTGCTGGTGAAAGAGCCAT
GGTGAATGTTCTCAGCTCCGTACACATTTTGGTCCAGTGTCTGTTGCTAT
AATTAAATATCACAAATGGATGAAGCTGAGTGGTTCAAGGTCAAGGGTGT
CCCTGAAGACAGTTTCTTCGCTGATGTAACCCTCTACAGTGTCCTAGGAA
AGCACAAAACACAATATGGCATGAAAGAGCAAGCTCGATGAGTTGGACCC
TTCCTTTCTTTATGAAGCCACAAAGCAGCCACCATCATTACCTCATACAG
TCTTATACTACCTTCAGTGACCTTCTTCAAATACCATTAATGTGTCACTT
TGAAGACTAAGATTCACCTGAGCTTTGGAAATGGCAAACACCTGGACCAC
CACACATGAAAACCTTTTCTTATTTGATGGTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCTGAGCCTTTTCTCTGTGGATTTGTCTAGTGA
TTGCTTTGCTGTTCTGTTTACTCATTGTAAAATGGTGATAAAAATCCTGC
CCAACAATGGGATTGGGAGTAGAAAATCGCATTTACCCCTCACCTCCGAG
TTTCTGTTATCTTTATTTATCTGTAGAATAATGTCTTGTGATTTCATTGT
TGACTTATCTAGAGATAGTGGGCTTGAGTGCTTTTCAGTGATGTGACACA
TTTATCTTTTAATGCTCTTGAATGTGCTTTGACAGTGCCAGTTGTCTCAG
TTGACAGAAGCAGAAGTTAACAAGCAAACAAATGCCTGAAAGTGGGAGGG
ACTGCACACCTCTGAGTGTAACTGAGAAGAGCTGTGTGTCTGTGTTCTAG
GGGCTCAGACCTTCTGCCAGAGATGCCTGAGGAGGCCTTGTGCAGGCAGG
AGCCTGATCTCCCTGTGACAGGGGAGACACCATTCTCCTAGTAGGAGCTC
TTGGAGAGGTAGCAACAGGGAGTTAGAATAGGAGATGCTCCATGTTCCCC
ATTCTAACCTGGGAGTGACCTACTCATGGAGTGGAACTTTGCTCCACATG
CTACAAGCCTTCTCCAAGAAGCTATTCCTTGGGAGAGACCCCACTTATAT
ATAGGTTAGTCTGTCTGGGTATAGTGATGTAACTTATCATTGGAAGAGGC
CCTGGAGCTCAGTTAACAGGTCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_k20.b1 MSMg01no498_k20.b1 CHROMAT_FILE:
MSMg01no498_k20.b1 PHD_FILE: MSMg01no498_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:49 2005
         (636 letters)



>mm_chr2_131487203_131488235
          Length = 1033

 Score = 1139 bits (589), Expect = 0.0
 Identities = 620/631 (98%), Gaps = 3/631 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccaacctactaacgaaaaaaatgtgagtgcgggaaggggaaagagagagagagaga 65
           ||||||||||||| || | ||||||||||||||||||||||||  ||||||||| |||||
Sbjct: 833 aattccaacctacaaaag-aaaaaatgtgagtgcgggaagggg--agagagagatagaga 777

                                                                       
Query: 66  atctaagctaccaaatataatttttaatatcatgatccctcaatgtataggctttacaga 125
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 776 atctaagctaccaaatataatttttaatatcataatccctcaatgtataggctttacaga 717

                                                                       
Query: 126 gcagatgcttggatgttcacatatttgccatcagctgacatacttagtgccaaatcacct 185
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gtagatgcttggatgttcacatatttgccatcagctgacatacttagtgccaaatcacct 657

                                                                       
Query: 186 cctgaggagtttgcactggacatgaccttcatcatggtcatttctgagtggtaatcactg 245
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 656 cctgaggagtttgcactggacatgaccttcatcatggtcgtttctgagtggtaatcactg 597

                                                                       
Query: 246 aaccccacttgaataccctaagctcttactgcttcatgagaaagaccatctcatggagca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaccccacttgaataccctaagctcttactgcttcatgagaaagaccatctcatggagca 537

                                                                       
Query: 306 ttctttggtatgatagattcaaactcaaagtctgctggtgaaagagccatggtgaatgtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttctttggtatgatagattcaaactcaaagtctgctggtgaaagagccatggtgaatgtt 477

                                                                       
Query: 366 ctcagctccgtacacattttggtccagtgtctgttgctataattaaatatcacaaatgga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctcagctccgtacacattttggtccagtgtctgttgctataattaaatatcacaaatgga 417

                                                                       
Query: 426 tgaagctgagtggttcaaggtcaagggtgtccctgaagacagtttcttcgctgatgtaac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgaagctgagtggttcaaggtcaagggtgtccctgaagacagtttcttcgctgatgtaac 357

                                                                       
Query: 486 cctctacagtgtcctaggaaagcacaaaacacaatatggcatgaaagagcaagctcgatg 545
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 356 cctctacagtgtcctaggaaagcacaaagcacaatatggcatgaaagagcaagctcgatg 297

                                                                       
Query: 546 agttggacccttcctttctttatgaagccacaaagcagccaccatcattacctcatacag 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agttggacccttcctttctttatgaagccacaaagcagccaccatcattacctcatacag 237

                                          
Query: 606 tcttatactaccttcagtgaccttcttcaaa 636
           ||||||||||||||| |||||||||||||||
Sbjct: 236 tcttatactaccttcggtgaccttcttcaaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1033
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1023
Effective search space:   640398
Effective search space used:   640398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no498_k20.g1 MSMg01no498_k20.g1 CHROMAT_FILE:
MSMg01no498_k20.g1 PHD_FILE: MSMg01no498_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:49 2005
         (590 letters)



>mm_chr2_131394416_131395405
          Length = 990

 Score = 1071 bits (554), Expect = 0.0
 Identities = 581/590 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgagccttttctctgtggatttgtctagtgattgctttgctgttctgtttactcat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tccctgagccttttctccgtggatttgtctagtgattgctttgctgttctgtttactcac 260

                                                                       
Query: 61  tgtaaaatggtgataaaaatcctgcccaacaatgggattgggagtagaaaatcgcattta 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 261 tgtaaaatggtgataaaaatcctgcccaacaatgggattgagagtagaaaatcgtattta 320

                                                                       
Query: 121 cccctcacctccgagtttctgttatctttatttatctgtagaataatgtcttgtgatttc 180
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccttacctccgtgtttctgttatctttatttatctgtagaataatgtcttgtgatttc 380

                                                                       
Query: 181 attgttgacttatctagagatagtgggcttgagtgcttttcagtgatgtgacacatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgttgacttatctagagatagtgggcttgagtgcttttcagtgatgtgacacatttat 440

                                                                       
Query: 241 cttttaatgctcttgaatgtgctttgacagtgccagttgtctcagttgacagaagcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttaatgctcttgaatgtgctttgacagtgccagttgtctcagttgacagaagcagaa 500

                                                                       
Query: 301 gttaacaagcaaacaaatgcctgaaagtgggagggactgcacacctctgagtgtaactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gttaacaagcaaacaaatgcctgaaagtgggagggactgcacacctctgcgtgtaactga 560

                                                                       
Query: 361 gaagagctgtgtgtctgtgttctaggggctcagaccttctgccagagatgcctgaggagg 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagagctgtgtgtctatgttctaggggctcagaccttctgccagagatgcctgaggagg 620

                                                                       
Query: 421 ccttgtgcaggcaggagcctgatctccctgtgacaggggagacaccattctcctagtagg 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttgtgcaggcaggatcctgatctccctgtgacaggggagacaccattctcctagtagg 680

                                                                       
Query: 481 agctcttggagaggtagcaacagggagttagaataggagatgctccatgttccccattct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctcttggagaggtagcaacagggagttagaataggagatgctccatgttccccattct 740

                                                             
Query: 541 aacctgggagtgacctactcatggagtggaactttgctccacatgctaca 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacctgggagtgacctactcatggagtggaactttgctccacatgctaca 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)