BAC Information

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BAC

Clone NameMSMg01-498K24
Chromosome2 (Build37)
Map Location 59,141,166 - 59,141,683
singlet/doubletsinglet
Overlap genePkp4
Upstream geneAcvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498K24.T7 (MSMg01no498_k24.b1)MSMg01-498K24.TJ (MSMg01no498_k24.g1)
ACCAG574951AG574952
length7651,389
length of high quality
(start - end)		523 (55 - 577)---
definitionCHROMAT_FILE: MSMg01no498_k24.b1 PHD_FILE: MSMg01no498_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:50 2005CHROMAT_FILE: MSMg01no498_k24.g1 PHD_FILE: MSMg01no498_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACGTCTGGAATTTTAATGTGAGATTTCAGTTGTG
TGTGTCTTCTCTGGTAGAATATTATCTGAGTCACTGCCAGTCAGGTAACA
GTGAAATGACCTGCTTCATTTGAAATCCTCTACTAGGAGTTTCTAGAGCT
CTGCATACGTTATATAGCAATTCCTGGAGGAATCTGTTAAGTCTTCGTTA
GCACACAGAGAGTACGCTGGCCAGAAGAGTTCACAGGGAACCAGAAGAGC
CAGAGGAGCTGCAGGGGGCATTCACCCAGCAGAGAATACTGGGAAGATAG
GCAAAGCGCTTCATACACTGCCCCCTGACACTTAATTAGTATCTTTACAA
ACAGAAAAGCAAACAAACAATATTACCCTAAAAGCAACATTAGCTATGTG
ACCTTAAAGTCTAATCACCTGACTGTTTCTTCTAGTTCTCAATTCCGTGC
CCTGAGAACCAGAGTGCAGCAGAGGGGACCTGTAAACTATCTGGAGCGCT
AAAATACCACACTGCCCTGCAAGGAGAGGTTAAGTAGCTGTGTGTAGAGA
GGAAAGGGGTTTTATGTCCCATCTCTAAGCCAATATGGCAGGTAGAGTTG
TGACAACTTGATGAAGAGCTCGGTTTAGTATGCACGATATAAGTCAATCC
ACCTTTATACTGTGCATGATCTCCTCCGTCATCTTCTTCCTGTGGAGCAT
CAGTGAGCATCTGTN

TCTTACCTCTTTTTCCGCTTCTTTCTTACGCCTTCTTCTTTTCCCTTCCC
TTTGTTCGTATTCCTCCCTTTCTTCTTTCACCTACGCCGCCGCCATTCGT
TCGCCGCCGGCGCCGTCGATTGCACGGCACCGCTTCTCTCCCGTAAATAT
TTAGAGGATGCATACATACTATGCAATCGCATCTCTGCCGATTAATATCT
TTGTACCTGTTTGGTATTCTGGCACATTCACACACCATAGTCTCGTATAT
GCATACGTCCCCTTACTTACACTTCTCTATGCTGCCGCATGATGACGATC
TTAATATAACAACACATACGTCGTAGATATACACGCTCATCACACTCCTC
TGTATGTCATCCTCTAGGATCTAGACGTTCATTCCAGTCTAGATTTCCCG
TGATATCTTGCACATTCTTCTACTCCTCCGCTTCGTCGCGACATACACAT
CGTGCTCTACAGCACATATTTGTGAACATAATCTGTCAATACTCACTTAT
ACATCTGCTGAGTTGTCCTCAACACGATTCTCATTTATAGTCCCGTTCTC
CTCCCGTGTATAACGACTTGGAATACGCCTATCTCTTTCTATTCACAACT
ATGCCCAGTGCCTGCTCGAACTCATGCACTAGTATGTATCCCTAGTGTCT
GAAGATCAATAAGTTCTTTACACTAACGTCTCACGGCATGTGCATCGCTA
TCAGTCGCAACCTCTCGCGCTACTCAAGTGTAGTCGTTTCCTCCTCCAAT
TATAGAATCTACTCGTGTTTCCTTAACATTCTCACCGTACTCATTTACTT
TGTATTGAAAATGGGNCTGCTTATTACGCACCGTCCATACGACGGTGTAT
TCTCTTAGATTTATACACTTCTCTGCGTCTATATCGTCACAACTTCTACT
CTCCGGCGCGTAGAGTTTGTTTATCATACANTGTTACATAATAACCATAA
CTTTCTGTCGCCTCAATATTCATCGCACTAGCTCATGGCAACGTGCTCGT
ATGTCTTGGCCTGATTTACGCTATGACACACACACTCTTCCTCCTCGTGT
GAGAGTACGGTTATTCGCGTTATATAGTAGTCGACACAGAACGTGTGTAT
AATTTTTCTCGAGGCTCATATCTCTGTGTGTCTGAGATAATATCTTACCG
CCTTATCTTCTCTCCGACGATATTTGTTATGTATACAACATATCGTCGTA
CCGAATTGTAGGCACCCTACCTCTCTTTATCCCTTTACAGAAACCGTGAC
GATTCTATTGTCGCGCTACACGTGTGTGATTATACCNCACATAATGCCGA
CTAATTACACCGCGCGTTTATTAATACTATATCGGCGCGCTCTATCGGCG
TCTATGTTACTCAGCACACTCGCGTACACGATGTTGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_k24.b1 MSMg01no498_k24.b1 CHROMAT_FILE:
MSMg01no498_k24.b1 PHD_FILE: MSMg01no498_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:50 2005
         (523 letters)



>mm_chr2_59140962_59141883
          Length = 922

 Score =  942 bits (487), Expect = 0.0
 Identities = 511/519 (98%), Gaps = 1/519 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacgtctggaattttaatgtgagatttcagttgtgtgtgtcttctctggtaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattctcacgtctggaattttaatgtgagatttcagttgtgtgtgtcttctctggtaga 663

                                                                       
Query: 65  atattatctgagtcactgccagtcaggtaacagtgaaatgacctgcttcatttgaaatcc 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acattatctgagtcactgccagtcaggtaacagtgaaatgacctgcttcatttgaaatcc 603

                                                                       
Query: 125 tctactaggagtttctagagctctgcatacgttatatagcaattcctggaggaatctgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 602 tctactaggagtttctagagctctgcatacgttatatagcaattcctggaggagtctgtt 543

                                                                       
Query: 185 aagtcttcgttagcacacagagagtacgctggccagaagagttcacagggaaccagaaga 244
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 542 aagccttcgttagcacacagagagtacgctggccagaagag-tcacagggaaccagaaga 484

                                                                       
Query: 245 gccagaggagctgcagggggcattcacccagcagagaatactgggaagataggcaaagcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gccagaggagctgcagggggcattcacccagcagagaatactgggaagataggcaaagcg 424

                                                                       
Query: 305 cttcatacactgccccctgacacttaattagtatctttacaaacagaaaagcaaacaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 423 cttcatacactgccccctgacacttaattagtatctttacaaacagaaaagcaaataaac 364

                                                                       
Query: 365 aatattaccctaaaagcaacattagctatgtgaccttaaagtctaatcacctgactgttt 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 363 aatattaccctaaaagcaacattagctatgtgaccttgaagtctaatcacctgactgttt 304

                                                                       
Query: 425 cttctagttctcaattccgtgccctgagaaccagagtgcagcagaggggacctgtaaact 484
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttctggttctcaattccgtgccctgagaaccagagtgcagcagaggggacctgtaaact 244

                                                  
Query: 485 atctggagcgctaaaataccacactgccctgcaaggaga 523
           |||||||| ||||||||||||||||||||||||||||||
Sbjct: 243 atctggagtgctaaaataccacactgccctgcaaggaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space:   467856
Effective search space used:   467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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