Query= MSMg01no498_l17.b1 MSMg01no498_l17.b1 CHROMAT_FILE:
MSMg01no498_l17.b1 PHD_FILE: MSMg01no498_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
(667 letters)
>mm_chr2_139006051_139007118
Length = 1068
Score = 1214 bits (628), Expect = 0.0
Identities = 655/664 (98%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgtgctcacatattttctcacagtgtactcaaaacttctttttctag-aaaa 63
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 868 gaattctttgtgctcagatatttcctcacagtgtactcaaaacttctttttctagaaaaa 809
Query: 64 aaaaagcattctttaaagaatttttaaagatggttaactttgaaaagaatctcagtctaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaaaagcattctttaaagaatttttaaagatggttaactttgaaaagaatctcagtctaa 749
Query: 124 agtttgaacctgtcttggcttgctctgtagttcttcttttactgatatatttatggatat 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 748 agtttgaacctgtcttggcttgctctgtagttcttcttttgctgatatatttatggatat 689
Query: 184 gcgagggaaacttggacatttacagaaaactttatgaatatttgaatgaatgcccatcaa 243
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 688 gcgagggaaacttggacatttacagaaaactttatgaatatttgaaggaatgcccatcaa 629
Query: 244 gtggagttaacagactaagtgcttttatagcaggaaaaagtagctgtcatagaactcaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtggagttaacagactaagtgcttttatagcaggaaaaagtagctgtcatagaactcaga 569
Query: 304 gtcaagtgggagtagtaagtgtaagccacatgaaatccacttactggaaaataaatatat 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 568 gtcaagtgggagtagtaagtgtaaaccacatgaaatccacttactggaaaataaatatat 509
Query: 364 gtttttatgaaggaccctgaagcagccaaggctgctcttataggttattcttacactaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtttttatgaaggaccctgaagcagccaaggctgctcttataggttattcttacactaag 449
Query: 424 attggtgtgaaacttattccatgtctaaagaattgctgacttcaaatgagctgctaaata 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 448 attggtgtgaaacttattccatgtctaaagaattgctgtcttcaaatgagctgctaaata 389
Query: 484 gaatccaggtacaatggaagctgttcatataatttaagaaccaagagtatatcattaaac 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaatccagggacaatggaagctgttcatataatttaagaaccaagagtatatcattaaac 329
Query: 544 cagttgctttgacatttcatttcaagaattttaaagaaaaatagacaaggaaaatagtat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagttgctttgacatttcatttcaagaattttaaagaaaaatagacaaggaaaatagtat 269
Query: 604 ttctctaagcaatgataaagactgaattgtctaatgtaataagtatctagttgctatgtg 663
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 268 ttctctaagcaatgataaagactgaattgtctaatgtaataaatatctagttgctatgtg 209
Query: 664 ttgg 667
||||
Sbjct: 208 ttgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space: 695106
Effective search space used: 695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_l17.g1 MSMg01no498_l17.g1 CHROMAT_FILE:
MSMg01no498_l17.g1 PHD_FILE: MSMg01no498_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
(582 letters)
>mm_chr2_138852351_138853332
Length = 982
Score = 845 bits (437), Expect = 0.0
Identities = 555/615 (90%), Gaps = 34/615 (5%)
Strand = Plus / Plus
Query: 1 catgtttgctgaacgtggtcttataagtggaatggaaattagcatggctatcagctacat 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 169 catgtctgctgaacgtggtcttataagtggaatggaaattaacatggctatcagctacat 228
Query: 61 gttctccactggtgaagcaagggtgtggggggaacagagctac----------------- 103
|||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 229 gttctccactggtgaagcaagggtgt-gggggaagagagctacatgttaccatgatctct 287
Query: 104 -----------atagattaaacatctgaactgtacacaagccccaattaaatgcttttct 152
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 atcttattataatagattaaacatctgaactgtacacaagccccagttaaatgcttttct 347
Query: 153 ttatagtagttgccatggtcatggtgtcttttcacaacttagtcagaaaactgactaaga 212
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 348 ttatagtagttgccatcgtcatggtgtctttttacaatttagtcagaaaactgactaaga 407
Query: 213 caattgtctacctaataaccaagcagtgcctccagattttggtggctaatacaaaggaat 272
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 408 caattgtctgcctaataaccaggtagtgcctccagattttggtggctaatacaaaggaat 467
Query: 273 -----ggggtatgagaggaaggttgaatgagaagatctgtggaatccacggggaatgaag 327
|||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct: 468 gggggggggtaagagaggaaggttgagtgagaagatctgtggaatccacagggaacgaag 527
Query: 328 gcagaggatggaaatgtagcaggtgatctgctgcagggttgaagatattaatgcttattt 387
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 528 gcagaggatggaaatgtagcagatgatctgctgcagggttgaagatattactgcttattt 587
Query: 388 tctccataatggttaccatctaatatagaatattaaatgtaatatggactgaatagtata 447
||||||||||||||| ||| |||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 588 tctccataatggttatcatttaatatggaataataaatgtaatatggactgagtagtata 647
Query: 448 tggactgactagctgccatctgcagcagactccattaatgaaacatttgacctacaaata 507
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 648 tggactgactagctgccatctgcagcagactccattaatgaaacatttgatctacaaata 707
Query: 508 atgaagatagaaaaaattttcatttgtttctaagttttgcctcagcacatatacctacat 567
||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||
Sbjct: 708 atgaagatagaaaaatttttcgtttgtttgtatgttttgcctcagcacatatacctacat 767
Query: 568 gtgacattaactgtc 582
|||||||||||||||
Sbjct: 768 gtgacattaactgtc 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
