BAC Information

Click to search

BAC

Clone NameMSMg01-498O15
Chromosome2 (Build37)
Map Location 174,287,444 - 174,287,688
singlet/doubletsinglet
Overlap geneAtp5e
Upstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1
Downstream geneSlmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498O15.T7 (MSMg01no498_o15.b1)MSMg01-498O15.TJ (MSMg01no498_o15.g1)
ACCAG575122AG575123
length780769
length of high quality
(start - end)
244 (77 - 320)68 (256 - 323)
definitionCHROMAT_FILE: MSMg01no498_o15.b1 PHD_FILE: MSMg01no498_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:09 2005CHROMAT_FILE: MSMg01no498_o15.g1 PHD_FILE: MSMg01no498_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGGGCGG
AATTCACTGGACTTCCTTGAACTGGCAACTTCTTACACCCCAACACCTCC
GCACAGGGCAACCGAGCCAGCCTCCCTGAGCACACAGGGAGCTCAGCAGA
GCAGGACTTGCCTGGGGTTATGAGCCTTCCTGCCCGGATGCTGGGAGAAG
GGATGCGTGAGACACCAGCAGCTATGGGGAGGACCATTCGAAGTACTGCC
GTCCATGCCTCATGTTCCAGACCGTTTCATAACTCCAATAGCAATTATAA
GGGGGGGGGGCATCCTCCCATTTTTTTGATTTTGTGCAGATAAATGAACC
AGGTTTAATTAAAATAAGATGGCTTTCTATCTCAGGGTTGCTAACTGCAC
TGAAAAATCAATTTCCCCCCCACTGTTTGCCGGGGCTGTACAGGGCTCCC
CTCCCTCATGCCAGGCGACCTCTACAACCCGCACACTTGGAATGATCACC
CCAGTATCCGGCATCATCCAAGTCCACCCGCCCGCCGAGAGGCAGACGCT
CAAACTAAAGTTTTTGGGTTTGGCTTTATGGCACTTTAAAAACTTTAAGA
GGCAACTTGTGAGGAAACCAGTGACTCACTCACCAGCTACTCCTTCTTCG
CCACTTTCACAATTTTTATGCTGCTGCCCGAAGTCTTCTCAGCGTTTGCT
TTGAAATCGGGCTTTCAGGCATCCCTCACTGCTTATTGCCAGAACTGGGG
AAAACCGGATGTTACTGGTTAATTGAGATA
NAACGATGACAGTGGGAGGCCGGGNGGNTGCCCGGTTCCCCACCCGGGGN
GAANNANANAATTTTACGNGACGGGGGAAGAAAAACNAGAAGGAGGAACC
AAAACGCANNCAGAAATTAACCCCGGGACAAANCCANAGGCCAAGACGAA
CAAAACGGCCTTAAAAACCAAACGCCAGACAGAAGAACGGACACACAGCC
NCNAACAGGNAAAGAANCNANACCAACCAGACTCTCACAGGANCCCANAN
ATTTTTTTCATCATTTGAAGATTCAAAACAGCTAACATTAACAAGCATCA
AAGAAGGGCGAGCCTCATTTTATGTTTGTAANACCNCACAACAAGGNCAG
GAAGAAGGATTGTTTACCCCCACATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGACCCCCCCATAGATGGATGGACGAATGTGATACATTA
TATATATACTCATACATATATGTATATATATATACATATATATATATATA
CATCTCGGCGTGAACCTTTATCGCCTCTATTCCCCCCACTCCACTTTTTC
CCCTCCTTCCTTTTTTACACCTTCACTGCGCCTTGACTATCTTCCGAAGG
GCCGCAAAACATTTTTATCTTTTCTCTTTTCTCCGCACGACGAGGCCCAA
CAGATAGTCCTTCTTTTTTTTTTTTTTGTCGCATTTTTTTTTTTCGGCCC
TATAGAACTCTTTCCGCTTACTTGCGCTCCGCCGTTTCCCATAAAACCGC
TTTCTACCTTGTGTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_o15.b1 MSMg01no498_o15.b1 CHROMAT_FILE:
MSMg01no498_o15.b1 PHD_FILE: MSMg01no498_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:09 2005
         (244 letters)



>mm_chr2_174287244_174287888
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttcttacaccccaacacctccgcacagggcaaccgagccagcctccctgagcacaca 60
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 201 aacttcttacaccccaacacctccgcacagggaaactgagccagcctccctgagcacaca 260

                                                                       
Query: 61  gggagctcagcagagcaggacttgcctggggttatgagccttcctgcccggatgctggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagctcagcagagcaggacttgcctggggttatgagccttcctgcccggatgctggga 320

                                                                       
Query: 121 gaagggatgcgtgagacaccagcagctatggggaggaccattcgaagtactgccgtccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagggatgcgtgagacaccagcagctatggggaggaccattcgaagtactgccgtccat 380

                                                                       
Query: 181 gcctcatgttccagaccgtttcataactccaatagcaattataagggggggggg-catcc 239
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gcctcatgttccagaccgttacataactccaatagcaattataagggggggggggcatcc 440

                
Query: 240 tccca 244
           |||||
Sbjct: 441 tccca 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)