Query= MSMg01no499_a04.b1 MSMg01no499_a04.b1 CHROMAT_FILE:
MSMg01no499_a04.b1 PHD_FILE: MSMg01no499_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:17 2005
(275 letters)
>mm_chr2_121585948_121586624
Length = 677
Score = 503 bits (260), Expect = e-147
Identities = 272/276 (98%), Gaps = 2/276 (0%)
Strand = Plus / Minus
Query: 2 ggaattctgcaggacattgct-ccaaagtggctcccgttggaggaaa-atggtggcggct 59
|||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 ggaattctgcaggacaaagctcccaaagtggctcccgttggaggaaacatggtggcggct 418
Query: 60 gtgaggttggacaggaaaaggcccttgcttctgctcaggactctcgttcgatctattgca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtgaggttggacaggaaaaggcccttgcttctgctcaggactctcgttcgatctattgca 358
Query: 120 tggcacggattggtgcgcagggcttccctctgaaagtttctcctgcagtatctcttacca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tggcacggattggtgcgcagggcttccctctgaaagtttctcctgcagtatctcttacca 298
Query: 180 ttcttggaaatggctttaagctgtcttttcttgtttggagttaatgggacactggagcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttcttggaaatggctttaagctgtcttttcttgtttggagttaatgggacactggagcag 238
Query: 240 aaacagttatagtgttgtctgagctcttcgcggaac 275
||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaacagttatagtgttgtctgagctcttcgcggaac 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 677
Length adjustment: 9
Effective length of query: 266
Effective length of database: 668
Effective search space: 177688
Effective search space used: 177688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no499_a04.g1 MSMg01no499_a04.g1 CHROMAT_FILE:
MSMg01no499_a04.g1 PHD_FILE: MSMg01no499_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:17 2005
(544 letters)
>mm_chr2_121427979_121428922
Length = 944
Score = 1044 bits (540), Expect = 0.0
Identities = 543/544 (99%)
Strand = Plus / Plus
Query: 1 ccatttagcagtgtgtgaaggtcaagaatatggaattccagctaaaatctgaactgacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatttagcagtgtgtgaaggtcaagaatatggaattccagctaaaatctgaactgacgg 260
Query: 61 tcttaaagaccagagtctctagacatatgcccctccttcccatacagcaaaatctagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaaagaccagagtctctagacatatgcccctccttcccatacagcaaaatctagctc 320
Query: 121 aaagactcctgctgggaagcaggcatttccaactgcagtgactcaggactcattacgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagactcctgctgggaagcaggcatttccaactgcagtgactcaggactcattacgaga 380
Query: 181 tccaacaacttggctttccagagtccgtggggctttgacgatctaaattaaggtttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaacaacttggctttccagagtccgtggggctttgacgatctaaattaaggtttgctt 440
Query: 241 aatggagtggctttgctttagaaaacagttttattggaaatctgagatgtgcttccccta 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aatggagtggctttgctttagaaaacagttttgttggaaatctgagatgtgcttccccta 500
Query: 301 aaatacatttaatgttactcatctggaataatgggacagaggggaccaggattacttacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatacatttaatgttactcatctggaataatgggacagaggggaccaggattacttacc 560
Query: 361 agctcttaagtgtttataatgaaatgaaatatttgctactttcagtgatgatatatgtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctcttaagtgtttataatgaaatgaaatatttgctactttcagtgatgatatatgtaa 620
Query: 421 agtaaaaatataaattaatcatgagtaagcagacattaacgaggacacatggtatatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaaaaatataaattaatcatgagtaagcagacattaacgaggacacatggtatatatt 680
Query: 481 tatgaataatactgctccacaaaagagagttccttaatattaaggactgggctaggtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgaataatactgctccacaaaagagagttccttaatattaaggactgggctaggtata 740
Query: 541 taat 544
||||
Sbjct: 741 taat 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
