BAC Information

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BAC

Clone NameMSMg01-499A24
Chromosome2 (Build37)
Map Location 158,237,524 - 158,397,024
singlet/doubletdoublet
Overlap geneB230339M05Rik, LOC628935, BC054059, LOC545481
Upstream geneSrc, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik
Downstream geneSlc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499A24.T7 (MSMg01no499_a24.b1)MSMg01-499A24.TJ (MSMg01no499_a24.g1)
ACCAG575236AG575237
length713741
length of high quality
(start - end)		396 (318 - 713)645 (59 - 703)
definitionCHROMAT_FILE: MSMg01no499_a24.b1 PHD_FILE: MSMg01no499_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:21 2005CHROMAT_FILE: MSMg01no499_a24.g1 PHD_FILE: MSMg01no499_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,396,629 - 158,397,024)(158,237,524 - 158,238,168)
sequence
GCGGCCGCTATACGACTACTATATTTCTAAACCCGCGGAATTCTCAACAA
CTTACATCTGACCAACAGGTCTTTACTTCAAAGCTGTTGAAAGTGTTGGT
CCTACTTCTAGAATATTTCTTTTACCTGGATCACAAGGACTCTTCTTCCC
AGAAGCTTTCTGGGGCTCCTGTAGTCCGTATTATCTGCCACCCTTGGCTG
CCATAGCTCTCCACACCTTCCACATCACAGTAGACCTCACAGTGCTTAGC
TGCAGCCCCTTTCCTTCCACCCTGTCCCCCACTAGCCTCCAAACTCCTGA
AGACAGAATGTTTTTATAGGACAGGTGCAGAGTGGGAGTTCGGTCCATAA
CTGTGGAACAAACTGGTTACAATCCCTTCCTTCCCCAACCCATGACTCTC
CTCAACCACTGGGAGGCCAGGTGACTATTAAGGCTTTTCATAGAATTGTT
GCCAAAACAACAAATAATAACTCCAGGGAAATTAATTGTCAGATCTGCTC
TTTCATTAGTGGCTCATCAAAGGACTGTGAGCCCCCAGGGGGACTCTTAA
AACTAAGTAACCGATCAGCATGGGAGGAGGCATCTTCTACCCGGAAGCCC
CCTCCACCAGCACAACATGCAAACAGACACACCTCCTGTGAATTGCCGGG
CCTGGCCATTTAACACAGTTATTACCAACTCCCCCTTAGTGAATTACAGG
CAAGAGCCTCGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTATCCATGACAAGGCACGATGTAAGACCATGTTCCAGCAAC
ATTGGTTGGCTTAGCTGCGTGAGGTGGCACATGCCTTTAATCCCTGCACT
CAGGAGGAAGAAGCAGGTGTATCTCTTTAAGGCCAGCCTGCTCTGCACAG
TGAGTTAGTGACAGGACAGCCAGGGCTCCATACAGAGGCCTGCCTCAAAC
CTCCACCCAACCAATCAACACACAAAAACAAACAAAACAAGAACATTGGT
GAATTTTATTGTTAACTTCCATGTAGACAGTCTATTCTATAGTGAGAGAC
TTTTTATTGCCATTGGGGTTTTGCATGTGGCCTTTCCTCATTGTCTAAAA
GAAGTGTTGTCTAGATGCTATTGCCTTGTATGTATCAACGTACGCAGTTA
TAGTTCATCCCATCTGATGGGAGACAGTCAGCTCTGTATCAGAGCAACAA
TACAGACTCGGTGTAGTTTATTACATAATGTCTGAACTGCCATTGCTGCA
CATGCTTACCAGTTTTAAAGGAAGTCAGTGCAATAATTCTCATTGCTTCT
GTTTTTAGTACCGCCCCCTTTTTTGGTAAAATTTATTTTTATGTTTATGG
GCATTTTGATTGCATGCATGTATGTGCACTACTTGGATGTCTGGTGCTTG
CAGAGGCCAGAAGAAAGTGTCANGTCCTCTGTGACTGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_a24.b1 MSMg01no499_a24.b1 CHROMAT_FILE:
MSMg01no499_a24.b1 PHD_FILE: MSMg01no499_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:21 2005
         (396 letters)



>mm_chr2_158396429_158397224
          Length = 796

 Score =  750 bits (388), Expect = 0.0
 Identities = 394/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacaggtgcagagtgggagttcggtccataactgtggaacaaactggttacaatccct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 596 aggacaggtgcagagtgggagttcggtccataactgtggaacaaactggttacactccct 537

                                                                       
Query: 61  tccttccccaacccatgactctcctcaaccactgggaggccaggtgactattaaggcttt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tcctcccccaacccatgactctcctcaaccactgggaggccaggtgactattaaggcttt 477

                                                                       
Query: 121 tcatagaattgttgccaaaacaacaaataataactccagggaaattaattgtcagatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcatagaattgttgccaaaacaacaaataataactccagggaaattaattgtcagatctg 417

                                                                       
Query: 181 ctctttcattagtggctcatcaaaggactgtgagcccccagggggactcttaaaactaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctctttcattagtggctcatcaaaggactgtgagcccccagggggactcttaaaactaag 357

                                                                       
Query: 241 taaccgatcagcatgggaggaggcatcttctacccggaagccccctccaccagcacaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taaccgatcagcatgggaggaggcatcttctacccggaagccccctccaccagcacaaca 297

                                                                       
Query: 301 tgcaaacagacacacctcctgtgaattgccgggcctggccatttaacacagttattacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgcaaacagacacacctcctgtgaattgccgggcctggccatttaacacagttattacca 237

                                               
Query: 361 actcccccttagtgaattacaggcaagagcctcggg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 actcccccttagtgaattacaggcaagagcctcggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no499_a24.g1 MSMg01no499_a24.g1 CHROMAT_FILE:
MSMg01no499_a24.g1 PHD_FILE: MSMg01no499_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:21 2005
         (645 letters)



>mm_chr2_158237324_158238368
          Length = 1045

 Score = 1216 bits (629), Expect = 0.0
 Identities = 641/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatccatgacaaggcacgatgtaagaccatgttccagcaacattggttggcttagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttatccatgacaaggcacgatgtaagaccatgttccagcaacattggttggtttagctgc 260

                                                                       
Query: 61  gtgaggtggcacatgcctttaatccctgcactcaggaggaagaagcaggtgtatctcttt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaggtggcacacgcctttaatccctgcactcaggaggaagaagcaggtgtatctcttt 320

                                                                       
Query: 121 aaggccagcctgctctgcacagtgagttagtgacaggacagccagggctccatacagagg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aaggccagcctgctctgcacagtgagttagtgacaggatagccagggctccatacagagg 380

                                                                       
Query: 181 cctgcctcaaacctccacccaaccaatcaacacacaaaaacaaacaaaacaagaacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcctcaaacctccacccaaccaatcaacacacaaaaacaaacaaaacaagaacattg 440

                                                                       
Query: 241 gtgaattttattgttaacttccatgtagacagtctattctatagtgagagactttttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaattttattgttaacttccatgtagacagtctattctatagtgagagactttttatt 500

                                                                       
Query: 301 gccattggggttttgcatgtggcctttcctcattgtctaaaagaagtgttgtctagatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccattggggttttgcatgtggcctttcctcattgtctaaaagaagtgttgtctagatgc 560

                                                                       
Query: 361 tattgccttgtatgtatcaacgtacgcagttatagttcatcccatctgatgggagacagt 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgccttgtatgtatcaacgcacgcagttatagttcatcccatctgatgggagacagt 620

                                                                       
Query: 421 cagctctgtatcagagcaacaatacagactcggtgtagtttattacataatgtctgaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagctctgtatcagagcaacaatacagactcggtgtagtttattacataatgtctgaact 680

                                                                       
Query: 481 gccattgctgcacatgcttaccagttttaaaggaagtcagtgcaataattctcattgctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccattgctgcacatgcttaccagttttaaaggaagtcagtgcaataattctcattgctt 740

                                                                       
Query: 541 ctgtttttagtaccgcccccttttttggtaaaatttatttttatgtttatgggcattttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtttttagtaccgcccccttttttggtaaaatttatttttatgtttatgggcattttg 800

                                                        
Query: 601 attgcatgcatgtatgtgcactacttggatgtctggtgcttgcag 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgcatgcatgtatgtgcactacttggatgtctggtgcttgcag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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