AATTCCGTATCTGCGNNGGAANCANCNACCCTTACGAGAGTCATTCTACC
CACATGTACATCCATCTACCCACATGACTATCCACCTGTCCACATGAGTA
TCCTTCTATACACATGTATATCCTACTCACATGTGTATACATCTAGCCAT
ATATATATATATATGAGTAGATGGATACTCATTTGGGTAGATGGATACAC
ATATGTGTAGATGGATACATATTTGAATAGATGGATGTATATATATAAAC
ACACACACACCTGCACACATGAGTATTCAGCTACTTACACTCGNATATAT
CTACCCACATGTCTATCCACCTACACACATTCATACTCATCTACTCATGT
ATTTATTCATTGTATCTATTTTCTCACATGTGTATCCATCTACTCTCATG
TGTATTCTTCTACCCAAATGTCTATCCATCTACCCACATATGTATCATTC
TACCTACATGTATATTCATATACCCACATGTATATTTATCTACTTAAATG
TGTACCTCTCTACCCATATGTATATTATTTTACCCACATTTCTATCCATC
TACTCACTTGTGTATTCATTTACCTACATTCTATCCATCTACTCATATGT
GTATTCACCTACCAACACGTGTATTTTTCTTTTCACATGNGNATTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTAAGCTAAATCCTCTCTCTCTCCTTAGCCGCTCTTCCTCACG
GGGTTTTAGTCACAGAAGTGGAACTAGATAGCGCTGACTTTGCCGGTGGA
TTAAGCCACTGAGGAGTTCATGCTGAAACTGGGTGGTGAAAGCTGACAGC
CAAAGCAGTTCTTGACATTTCTTCTCTGACTCCCATCTACCACGAGGTGA
GCAGCCTCGACAGCTACCTGCTCCTACCAGCTGCCTTCTGTAGCAGGTCA
ATGTCTTTATACAAACCATGGATGGAGCCCTCTGAAACCATGAGTGAAAA
TAAAAGGTTTCCCTTCCTGTTGATTTTCTTGGGGATTTGTCAGTGTAAGA
AAAGCTGATTGATGCCCGTTTGCTGGCACAGAGAGAACTGATTTGGGGGA
GTGTCTTCTTGGGTTTTGGGGACTTGAATGGGGTACCGTTATGGCTGTTG
CCCATACCAGCTCATTCAGCCCACTCCTTCAGGCTGCAATGTGGAGACCA
GCTGACTTTTCTCCTGCAAGGCTGAGGTGCTCAGGCCTAGGGCTATGAGG
ACAAACCAGGCACTGGGTGACTGGAGGCACAGGAGTGACCAGAGAAGGTG
AGCTTGGGTGAGACACTCCCGGCCATAAAACAACATGGG

Query= MSMg01no499_b11.g1 MSMg01no499_b11.g1 CHROMAT_FILE:
MSMg01no499_b11.g1 PHD_FILE: MSMg01no499_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:23 2005
         (579 letters)



>mm_chr2_173950073_173951052
          Length = 980

 Score = 1044 bits (540), Expect = 0.0
 Identities = 570/580 (98%), Gaps = 1/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagctaaatcctctctctctccttagccgctcttcctcacggggttttagtcacagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 taagctaaatcctctctctctccttagccgctcttcctcacggggttttagtcacagaag 721

                                                                       
Query: 61  tggaactagatagcgctgactttgccggtggattaagccactgaggagttcatgctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tggaactagatagcgctgactttgccggtggattaagccactgaggagttcatgctgaaa 661

                                                                       
Query: 121 ctgggtggtgaaagctgacagccaaagcagttcttgacatttcttctctgactcccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 660 ctgggtggtgaaagctgacagccaaagcagttcttgacatttcttctctgactcccagct 601

                                                                       
Query: 181 accacgaggtgagcagcctcgacagctacctgctcctaccagctgccttctgtagcaggt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 accacgaggtgagcagccttgacagctacctgctcctaccagctgccttctgtagcaggt 541

                                                                       
Query: 241 caatgtctttatacaaaccatggatggagccctctgaaaccatgagtgaaaataaaaggt 300
           ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caatgccttcatacaaaccgtggatggagccctctgaaaccatgagtgaaaataaaaggt 481

                                                                       
Query: 301 ttcccttcctgttgattttcttggggatttgtcagtgtaagaaaagctgattgatgcccg 360
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 ttcccttcctgttgattttcctggggatttgtcagtgtaaaaaaagctgattgatgcccg 421

                                                                       
Query: 361 tttgctggcacagagagaactgatttgggggagtgtcttcttgggttttggggacttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttgctggcacagagagaactgatttgggggagtgtcttcttgggttttggggacttgaa 361

                                                                       
Query: 421 tggggtaccgttatggctgttgcccata-ccagctcattcagcccactccttcaggctgc 479
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 360 tggggtaccgttatggctgttgcccatacccagctcaatcagcccactccttcaggctgc 301

                                                                       
Query: 480 aatgtggagaccagctgacttttctcctgcaaggctgaggtgctcaggcctagggctatg 539
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 300 aatgtggagaccagctgacttttctcctgcaaggctgaagtgctcaggcctagggctatg 241

                                                   
Query: 540 aggacaaaccaggcactgggtgactggaggcacaggagtg 579
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggacaaaccaggcactgggtgactggaggcacaggagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)