BAC Information

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BAC

Clone NameMSMg01-499D23
Chromosome2 (Build37)
Map Location 28,081,069 - 28,081,700
singlet/doubletsinglet
Overlap geneOlfm1
Upstream geneSardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb
Downstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499D23.T7 (MSMg01no499_d23.b1)MSMg01-499D23.TJ (MSMg01no499_d23.g1)
ACCAG575376AG575377
length701724
length of high quality
(start - end)
658 (1 - 658)607 (59 - 665)
definitionCHROMAT_FILE: MSMg01no499_d23.b1 PHD_FILE: MSMg01no499_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:35 2005CHROMAT_FILE: MSMg01no499_d23.g1 PHD_FILE: MSMg01no499_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCACTATAGTTCGAGGATCCGCGGAATTCAGCCTTGGTTTCCATGT
TTTAAAGGGAGCAGTTAGTGAAGGGGTGGAGAGAACCCCAGTGGGAGGCT
GGGAGGAAGTGGCGGGATGCCAGACACCCCAGGAATGTCCCAGTCCCTAC
TCCCACTGAGAAAGGATTAGAAAGGATGTCTGAGCTGCCAGCAGACAGAG
CTGCAGGCACCAGTAGATCTGTGTAATCTAAAGCATTCTGGATAATTCCA
CCCTCTGTTCTAAGGATCATCTGCTGGTTTTGATGCTGTTTAGATGAGAG
GAAAGATCCTTTGCGCACAGAGCTAAGTGAGGGTTTGAGGAATATGCCAC
CCTTTTGAACATGAGCCTCCTGGGGCAGTGGGTACAAGCCCCCTCTCTGA
TGTCTTGTGTAAGCTATACTGGACTCCTGAGGTGGCAAGCCAGTTGGAAG
CAGAAAGGGAGGTGGGTGGGACACAACTCTGTCAGAGTGTCTCAGTCCAA
GCAGACTGTGAGCCTGAGAATCCAGAAGGAAATCTCTGGAACTCTAGGGA
CCTGGAGGTGTGGTAGAGAGGTAGGGACTCATGCATCCTGCACACAAGGA
ATACAGCTCGCACCCACTTCTAATGTTGGGGACTGAGGGTCTGTGGCTCA
CTGCTGAGTAAGGTTCCTTTGCATAGCACGTTACATAGTTGGTGTTTGTT
A
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGAGACAAACTAAGCAATGCCTGAAAAAGTTATTGGCTATAC
CAATTAAAATAAGCCAACAACCCTGGTACTGATATCTGGTCCTTACAAAG
GTAGAAAACGTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGCG
TGCTGAGAGGGGAGTCCCCAACATGTTGGGTCAATAAAAAAAATCCTCAT
GCGGTTCACAACGATGGTGGTCTCTGTGGTCTTTGTGAGTGAGGTTCTCT
TGACAAACTACAACGGGAATATGAAGGAGAAGGAGTCCCACAGAACACTT
AAAGGGCACATATCCAGCAATTTTTTTTTAATGCCAGGTAGACCCTGCTT
CTTAAAAGAGCCACACTGTGCAGCAGGACTTACACTCGTGGGCTTGTGGG
AGACATTTAACATCTAAAGCATGACACCCATCCAATGACTCTGTGTCTGA
GGAGGATTGATAAAAAGTACTACAAGTGTCCTTTGTCAGCTTAATGCTTG
ACTGGGTACAATTTTAAAAGGTTCAAAGTTTTATAGATTGTGAAACTCAA
GGGTAAGTTGATTGCTGGAGGCAGGTCTTGGGCTTTGCGTTGCTTGCTTG
TTTTAAAATTTGTAAAAGATTTGTTTATTTTATGTCCATGAATGTTTTGC
ATGTGTGTGCTTGCGGCCGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_d23.b1 MSMg01no499_d23.b1 CHROMAT_FILE:
MSMg01no499_d23.b1 PHD_FILE: MSMg01no499_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:35 2005
         (658 letters)



>mm_chr2_28080843_28081900
          Length = 1058

 Score = 1168 bits (604), Expect = 0.0
 Identities = 625/632 (98%)
 Strand = Plus / Minus

                                                                       
Query: 27  ggaattcagccttggtttccatgttttaaagggagcagttagtgaaggggtggagagaac 86
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ggaattcagccttggaaaccatgttttaaagggagcagttagtgaaggggtggagagaac 799

                                                                       
Query: 87  cccagtgggaggctgggaggaagtggcgggatgccagacaccccaggaatgtcccagtcc 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cccagtgggaggctgggaggaagtggcgggatgccagacaccccaggaatgtcccagtcc 739

                                                                       
Query: 147 ctactcccactgagaaaggattagaaaggatgtctgagctgccagcagacagagctgcag 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctactcccactgagaaaggattagaaaggatgtctgagctgccagcagacagagctgcag 679

                                                                       
Query: 207 gcaccagtagatctgtgtaatctaaagcattctggataattccaccctctgttctaagga 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcaccagtagatctgtgtaatctaaagcattctggataattccaccctctgttctaagga 619

                                                                       
Query: 267 tcatctgctggttttgatgctgtttagatgagaggaaagatcctttgcgcacagagctaa 326
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 618 tcatctgctggttttgatgctgtttagatgagaggaaagagcctttgcgcacagagctaa 559

                                                                       
Query: 327 gtgagggtttgaggaatatgccacccttttgaacatgagcctcctggggcagtgggtaca 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtgagggtttgaggaatatgccacccttttgaacatgagcctcctggggcagtgggtaca 499

                                                                       
Query: 387 agccccctctctgatgtcttgtgtaagctatactggactcctgaggtggcaagccagttg 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agccccctctctgatgtcttgtgtaagctatactggactcctgaggtggcaagccagttg 439

                                                                       
Query: 447 gaagcagaaagggaggtgggtgggacacaactctgtcagagtgtctcagtccaagcagac 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaagcagaaagggaggtgggtgggacacaactctgtcagagtgtctcagtccaagcagac 379

                                                                       
Query: 507 tgtgagcctgagaatccagaaggaaatctctggaactctagggacctggaggtgtggtag 566
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtgagcctgagaatccagaaggagatctctggaactctagggacctggaggtgtggtag 319

                                                                       
Query: 567 agaggtagggactcatgcatcctgcacacaaggaatacagctcgcacccacttctaatgt 626
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 318 agaggtagggactcatgcatcccgcacacaagaaatacagctcgcacccacttctaatgt 259

                                           
Query: 627 tggggactgagggtctgtggctcactgctgag 658
           ||||||||||||||||||||||||||||||||
Sbjct: 258 tggggactgagggtctgtggctcactgctgag 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)