Query= MSMg01no499_f02.b1 MSMg01no499_f02.b1 CHROMAT_FILE:
MSMg01no499_f02.b1 PHD_FILE: MSMg01no499_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:40 2005
(525 letters)
>mm_chr2_70403572_70404495
Length = 924
Score = 901 bits (466), Expect = 0.0
Identities = 510/532 (95%), Gaps = 16/532 (3%)
Strand = Plus / Minus
Query: 5 ggaattccagtgacagtac-cgaaatctgtgcaacaccaagcccctaataatagtacctg 63
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggaattccagtgacag-acaggaaatctgtgcaacaccaagcccctaataatagtacctg 546
Query: 64 gagcataaagcgctacttccacccagtatctgtgctttctctttaaactacaatctcatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gagcataaagcgctacttccacccagtatctgtgctttctctttaaactacaatctcatc 486
Query: 124 taatcaccagaagaacccaggaaagtgttgtaggtctaagactcaggtgacaaaatcatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taatcaccagaagaacccaggaaagtgttgtaggtctaagactcaggtgacaaaatcatt 426
Query: 184 tcagcgcagaggctacaatttctcaaggtcacttggcctgaagttggtgttcagaaatat 243
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 tcagcccagaggctacaatttctcaaggtcacttggcctgaggttggtgttcagaaatat 366
Query: 244 tccagtgccgttccccacgccccaagttaggcgttaatattttaa---caggtaggaaga 300
||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 365 tccagtgccgtcccccacgccccaagttaggtgttaata----aaaaacaggtaggaaga 310
Query: 301 gagatgggggtcgagaacccctttgttgtagccggagttaagaatgcttccctccccccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 309 gagatgggggtcgagaacccctttgttgtagccggagttaagaatgcttccccccccccc 250
Query: 361 ataggcgataggcaggagggctcctgcttgccagggggttgctgg-------tgtgaggg 413
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 249 ataggcgataggcaggagggctcctgcttgccagggggttgctgggataaggtgtgaggg 190
Query: 414 tacaaggtgtgtaaggtgtatactggagcagaaagggacgccttccggtagaccctgcag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tacaaggtgtgtaaggtgtatactggagcagaaagggacgccttccggtagaccctgcag 130
Query: 474 aggcagagcccaacagcaaactgggcgggtgggggtgtgtcttccagggagg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggcagagcccaacagcaaactgggcgggtgggggtgtgtcttccagggagg 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_f02.g1 MSMg01no499_f02.g1 CHROMAT_FILE:
MSMg01no499_f02.g1 PHD_FILE: MSMg01no499_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:40 2005
(661 letters)
>mm_chr2_70273835_70274897
Length = 1063
Score = 1174 bits (607), Expect = 0.0
Identities = 650/669 (97%), Gaps = 8/669 (1%)
Strand = Plus / Plus
Query: 1 tctttccacattctgatttgattttcttgttgtgttcagctgtttgtgttttcttggaat 60
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 195 tcttttcacattctgatttgattttcttattgtgttcagctgtttgtgttttcttggaat 254
Query: 61 tcattcaggagattattcatatcccctttgaattccttcatgtgtttgttaatgtccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcattcaggagattattcatatcccctttgaattccttcatgtgtttgttaatgtccttt 314
Query: 121 ttggaatccttgaacatatttataatcattcttttgaattctttgcctagaatgtcatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttggaatccttgaacatatttataatcattcttttgaattctttgcctagaatgtcatct 374
Query: 181 ttgtcatggtcattggaagccattacaatgggattggtcattttccaccttggcttttta 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgtcacggtcattggaagccattacaatgggattggtcattttccaccttggcttttta 434
Query: 241 cattcctagtgtgtttacactgggatttttccatctggcatgagattgttgagacttcct 300
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 435 cattccttgtgtgtttacactgggattttcccatctggcatgagattgttgagacttcct 494
Query: 301 ggcactcctaggttatgtttgtttggtgcttggtagttctgcctcatgagtcttgagtag 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 495 ggcactcctaggttatgtttgtttggtgcttggtagctctgcctcatgagtcttgagtag 554
Query: 361 atttggttgcttgaggtttagctgtgaagagactcagtgttgattcatgaaaggtattga 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atttggttgcttgaggttcagctgtgaagagactcagtgttgattcatgaaaggtattga 614
Query: 421 tgaaaaaaaaaa--------gaagaagaaaggtattgatgaaggtgaccaaggttttgta 472
|||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgaaaaaaaaaaaagaagaagaagaagaaaggtattgatgaaggtgaccaaggttttgtg 674
Query: 473 gaataagccttgaccttttaaactggaatcagtgcagtagggtactggagttttccagaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaataagccttgaccttttaaactggaatcagtgcagtagggtactggagttttccagaa 734
Query: 533 gtggttccacgtgttctctgataattagaaccatgttttatacatgtaagctggagactc 592
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtgattccatgtgttctctgataattagaaccatgttttatacatgtaagctggagactc 794
Query: 593 cacaacctctaactccatgagctagatgtgtaaggagcattgttggtgtatgccaggtat 652
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 795 cacaacctctaactccatgagctagatgtgtaaggagcattgttggtgtacgccaggtat 854
Query: 653 gggtggctc 661
|||||||||
Sbjct: 855 gggtggctc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1063
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1053
Effective search space: 685503
Effective search space used: 685503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
