Query= MSMg01no499_g13.b1 MSMg01no499_g13.b1 CHROMAT_FILE:
MSMg01no499_g13.b1 PHD_FILE: MSMg01no499_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:47 2005
(675 letters)
>mm_chr2_114435002_114436076
Length = 1075
Score = 1282 bits (663), Expect = 0.0
Identities = 672/675 (99%)
Strand = Plus / Plus
Query: 1 gaaaaattactgcagagccagtcaccaaacaccaaagcaacattgatattgctgctgtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaattactgcagagccagtcaccaaacaccaaagcaacattgatattgctgctgtag 260
Query: 61 actaaacaaaagcaggaatcactgggtcttttaaacttttactagttttctagcctcaaa 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 actaaacaaaagcaggaatcactgggtcttttaaacttttactatttttctagcctcaaa 320
Query: 121 caggaaaagcagtttggaaatacagggctcattaaagaagtcctttcaaccattgttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaaaagcagtttggaaatacagggctcattaaagaagtcctttcaaccattgttaga 380
Query: 181 actcctggattctgccttgtatgtggaattataagaagagatttagtggtcaatttcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcctggattctgccttgtatgtggaattataagaagagatttagtggtcaatttcatt 440
Query: 241 atacttttcagttgtttataatcttatactgtaaaggggacagctgacagctgacattgc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacttttcagtagtttataatcttatactgtaaaggggacagctgacagctgacattgc 500
Query: 301 agagtttacataatatgtcaaatcactggccagcctaaaacacaaagcttgaaataagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagtttacataatatgtcaaatcactggccagcctaaaacacaaagcttgaaataagac 560
Query: 361 ttgaattagataaagaaaaagtgaaactcatacagttcccttttctttctgcattcatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaattagataaagaaaaagtgaaactcatacagttcccttttctttctgcattcatat 620
Query: 421 tttatcttactttgaactcatggtttaaaataaatcaaaattatttaatttaaaataata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatcttactttgaactcatggtttaaaataaatcaaaattatttaatttaaaataata 680
Query: 481 ccagtattaagtctccaaaatatctaaacaaaaataaatctctaaaaatgttttaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagtattaagtctccaaaatatctaaacaaaaataaatctctaaaaatgttttaaaaaa 740
Query: 541 ataattcagagttaaaaaaacagtatctccatactttcctacattaacaaggggcaggta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataattcagagttaaaaaaacagtatctccatactttcctacattaacaaggggcaggta 800
Query: 601 ataatgactgctcatatgacaatattgtctttgttagctctgcctcaacagaactaaaga 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataatgactgctcatttgacaatattgtctttgttagctctgcctcaacagaactaaaga 860
Query: 661 tttcctgattacaac 675
|||||||||||||||
Sbjct: 861 tttcctgattacaac 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_g13.g1 MSMg01no499_g13.g1 CHROMAT_FILE:
MSMg01no499_g13.g1 PHD_FILE: MSMg01no499_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:47 2005
(519 letters)
>mm_chr2_114485409_114486327
Length = 919
Score = 795 bits (411), Expect = 0.0
Identities = 474/523 (90%), Gaps = 46/523 (8%)
Strand = Plus / Minus
Query: 1 tctaggtcttcagcatcaggatgggatctgtgtggtatcgagcttagtgggccttggagc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 797 tctaggtcttcagcatcaggatgggatatgtgtggtatcgagcttagtgggccttggagc 738
Query: 61 tataggctcttatgatctcccctgtgaagacagccacttttgacctactcagattgtg-- 118
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 737 tataggctcttatgatctcccctgtgaagacagccacttttggcctactcagattgtgtc 678
Query: 119 --tcatgtctaccaatctaataactcccccttttaatatatatattaaaatgtatatata 176
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attcatgtctaccaatctaataactcccccttttaatatatatattaaaatg-------- 626
Query: 177 tatatatatatatgtgtgtatatatgtatatatatatacatatatatatatatgtatata 236
| ||||||||||||||||||| ||||||
Sbjct: 625 -------------------------g-atatatatatacatatata--------tatata 600
Query: 237 tatccattctgctggttttattcttctagagaaccctcatacactgttattcaattttaa 296
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tatccattctgctggtttcattcttctagagaaccctcatacactgttattcaattttaa 540
Query: 297 atcaagattgagaaagtatggtgtagccaaagcaatgcaaggccctctggtaaaggtatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atcaagattgagaaagtatggtgtagccaaagcaatgcaaggccctctggtaaaggtatt 480
Query: 357 aatccgatgggtacaagtattctcatattctgatggctccaaatttataaatatttaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aatccgatgggtacaagtattctcatattctgatggctccaaatttataaatatttaaat 420
Query: 417 aagtgtggcttagacagcaaagatccttaagccattaatgtctttgtagaaataagtatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aagtgtggcttagacagcaaagatccttaagccattaatgtctttgtagaaataagtatg 360
Query: 477 aagcatcattctgacgacttcctgtctaatattttagggaaga 519
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagcatcattctgacgacttcctgtctaatattttagggaaga 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
