BAC Information

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BAC

Clone NameMSMg01-499J10
Chromosome2 (Build37)
Map Location 13,274,662 - 13,275,009
singlet/doubletsinglet
Overlap geneCubn
Upstream gene2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
Downstream geneTrdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499J10.T7 (MSMg01no499_j10.b1)MSMg01-499J10.TJ (MSMg01no499_j10.g1)
ACCAG575635AG575636
length716774
length of high quality
(start - end)
334 (314 - 647)611 (74 - 684)
definitionCHROMAT_FILE: MSMg01no499_j10.b1 PHD_FILE: MSMg01no499_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:00 2005CHROMAT_FILE: MSMg01no499_j10.g1 PHD_FILE: MSMg01no499_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCATTATAGGGTCGACAACACGCGGAANNCNCACATGGGCTTTCGAA
AAAAAGCTCCTGTGTCCCATCCTTCTTTCCCAACTCATGGCAATCTCCCT
TTTCTCTCCCCTGTGCCCCCGTGCCCCCGTGCCCCCGTGCCCAAGCCCAA
GCAACTCTAAGGGTTCCGCCCCATCTTCCTTTGCCCAGCCTTTGGCCGCT
GGCATCTTTATTGATAGATCAAAAACAATTGGAGACTTTTACCTTTAGCA
TTTGGACACACAGATTCCCAATTGAATCAAAACATTCGAACCAATCTCCA
ACAGTTCTTGANAAATTTGTTGATAAATCAACTTTAAGAAGTCATTGAAA
GCTCAAAAGACACATTTCATCCTTAGAGAGACAACAATAAACTTGAAGGG
CCTCTGTTAGGATTAAACATACTAAATTTTAAAATACATAGCCCAAGGCC
ATGATAAAGCAGTGTTCAGTGAAGGATGCTTCATTCTTTGTTATGACTCT
CTGGTGTTTTAGGAACCACATTTTATGGCCCACAGTAGGCTAGAGCACAG
GTACTTATCTTGGTTTTCAACTTGAAACACCAGAACAACAACAGAAAGTT
ATCCTGTGAATTTGTCTATAGGGCGCTGTCTTGATTACTAACTGCTGTGG
GCAGCCCAGCCCAGTGTGGTTCTGAACTGTAGAAGAATCGCAGGTGAATC
CCAGCCTGGGCATAAG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTTAACCGTCTGCAAGGGAAGATAG
TAGAGTCCATGTTCTCAGGGACACAGTGTTCAGGGCTAGAGATGGAGCTT
GGTCCATAGGGTGCTTGCTAGGTATGCTGGAAGTCCTGGGGTCAATCCCC
AGGCATTGCATACACTAGGTGTGGTAGTGCAGTTCTATCAGCCCAGAGAA
AGAGAGAAGGAAGCAGGAAGATCAAAGTCCAAACATCCTTGGCTACATAG
GAAGTTTGAGAGTAGCCTGGACTACATATGACCCTGCCTAATAAATTAAT
TAATTTAATTAGAAACAGATGGACATACATACACATTGCCTTCTATGTAA
TAGACCATAAAGCAAATCAGTCAATACATTTTTACTTATTATTATTATTT
TTAAATTTTATTGTATGTACATTGGTGATTTGTAGGGCAAGTGTAAGGCT
CTTGGATTCCCTGGAACTAGAGTTGTAGACAGTTGCTATATGGGTGCTGG
GAGATGAACCCAGGTCCTCTGGAAGAGAAGTCAGAGCTCTTAACCAATGA
GCCATATCCTCACCTCCCAATCAACACACTTTTAAGTGTTAAAAGGATGA
TGGCTAGAAAATCTGCAGCACTGTAAGTCTGAAATCAGTAATAGAAACAC
TAATGGCCAAGTTTTAGAGAGCCAAAATTCTCAAATTTGAAATAACTTAA
ATGTAATCAGAAGGGTATTAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_j10.b1 MSMg01no499_j10.b1 CHROMAT_FILE:
MSMg01no499_j10.b1 PHD_FILE: MSMg01no499_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
         (334 letters)



>mm_chr2_13274621_13275358
          Length = 738

 Score =  555 bits (287), Expect = e-162
 Identities = 327/349 (93%), Gaps = 16/349 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgttgataaatcaactttaagaagtc-----attgaaagctcaaaagacacatttc 55
           ||||||||||||||||||||||||||||||     |||||||||||||||||||||||| 
Sbjct: 389 aatttgttgataaatcaactttaagaagtcattgaattgaaagctcaaaagacacatttt 330

                                                                       
Query: 56  atccttagagagacaacaataaacttgaagggcctctgttaggattaaacatactaaatt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atccttagagagacaacaataaacttgaagggcctctgttaggattaaacatactaaatt 270

                                                                       
Query: 116 ttaaaatacatagcccaaggccatgataaagcagtgttcagtgaaggatgcttcattctt 175
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 269 ttaaaatacatagcccaaggccatgataaag-aatgttcagtgaaggatgcttcattctt 211

                                                                       
Query: 176 tgttatga----------ctctctggtgttttaggaaccacattttatggcccacagtag 225
           ||||||||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tgttatgactgaagactcctctctggtgttttaggaaccacattttatggcccacagtag 151

                                                                       
Query: 226 gctagagcacaggtacttatcttggttttcaacttgaaacaccagaacaacaacagaaag 285
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 150 gctagagcacaggtacttatcttggttttcaacttgaaacaccagaacaacagcagaaag 91

                                                            
Query: 286 ttatcctgtgaatttgtctatagggcgctgtcttgattactaactgctg 334
           ||||| ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 90  ttatcgtgtgaatttatctatagggcgctgtcttgattagtaactgctg 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 738
Length adjustment: 9
Effective length of query: 325
Effective length of database: 729
Effective search space:   236925
Effective search space used:   236925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)