BAC Information

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BAC

Clone NameMSMg01-499L08
Chromosome2 (Build37)
Map Location 120,227,241 - 120,227,840
singlet/doubletsinglet
Overlap geneTmem87a
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Downstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499L08.T7 (MSMg01no499_l08.b1)MSMg01-499L08.TJ (MSMg01no499_l08.g1)
ACCAG575726AG575727
length839756
length of high quality
(start - end)		182 (64 - 245)625 (75 - 699)
definitionCHROMAT_FILE: MSMg01no499_l08.b1 PHD_FILE: MSMg01no499_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:09 2005CHROMAT_FILE: MSMg01no499_l08.g1 PHD_FILE: MSMg01no499_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCCTATAGGTCGNTATCGCGCGGAATCAAGGCCTG
GTACCTGGACCAGAGAAGGCTGAGGCAGGACTGTAAATTCAAGGCCTGGT
CTACAGACTGAGATCGCAGACAGCCTGGACGATTAAAACATGGGCTGGGG
ATGTAGCTACTGAGCTCTTGCTAATATGTGGAAGAACTTGAAAGAAAGAG
ATAAAGAGAGAAAGGGAGAAAGGGGGAAAGGGGGAAAGGGGTATTTTCGG
AAAGGGGTATAGTTTATTTTTTATTTTTTGTTTTTATTATTTGATAGAGC
GGAGTGGGTTTTTTCTCNTTTCCAAAACCCCCCCGCGCAACGCGCACAAA
TTTTTTTTTCCCCCCCCACTTCTCTGGTTTTTTTTTTACTTTCTTTTTTC
CTTTTTTTTTTCTCCCCCCTCTTTCTTTTTTTTTTTTTGTTGTCCCGCCA
TTTCTCCACCTTTTTTTTTTATAACCGTGATCGCTCTCTCTATATATTTA
AATATTTTTGTTCTCGTGCTATTGCTATTACATTTTTTTCTCTTTTTTCT
CCTATCTTTTTTTTTTCGTCTGTTCTTCTTTTTATTCTTTGACTTTCTTC
TGTTTATTCTATTCTTATCTTGTTTTATTGTTTTGTTAATATAGTCTTAC
TACTGCTATGTTACTCTTTCAACGTTCTTTTCTACATTTCTATTATGTAT
CTTTTANGCATTGCTATATATTTCCTTTCTTTCTCACCTTCACCCTTCTA
TCATTTTTATCATCCTTCCACTTTTCACATTCTCTTTCCTCTTTTCATCT
TATTCTATGTTATTGCTTCCCTGTGTATTCTATATTCCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCGAAAAATATTGGCTGTATGTTATACAGTGTGTAT
GTATATTTATGTACATAAATTATATTTTTAATCATAGTTAAGTTGAATTA
TATTTAATTTTGTTTGTAGAGTGCTTACATCATTTTTAGATCTGTTCTGA
GTCAGGACAAGATTTTGTGCTTGTGTGCTTGTTAGCTATTTACTGAAAAC
ATGGCCCAAGATTGTGAGACCATTGACTAAGATACTCAGTATGTTTACCA
AGGGAGTGTTTAACACTTCAATTTTTATTGAGTTCAAGGATATTACCAGG
AAATAGGGACTGTATAGAAGAAAGCCAGTTTTTCTAGTGAGAGAAACAAA
AGATCTGAAGCCAAACTGCGCTCTGTTTTTGAGATGGGGATAGTATTCTA
GATCATCACTGTCATGTGACTTTGTTTGTTTGTTTGGAGACAGAGTTTTT
CTCTGTAGCTTTGTGACTGTCTTGGAATTCACTCTGTACACCAGGCTAGC
CTGGAACTCACCGAGATCCATCTATCTTTGCCCCTGCAAGTGCTGGGATT
AAAGGTGGTGCACCACCACGGTCTACCAGGCTTCTCTGGTTTTTGAAATA
GGTTCTTACTATGTAGCCCAAGGCCAGCCTTAAGTTCAGTTTCTCAAGTG
CTAGGATTATTAGACATGAACTACTAAATCTTGGNTCATGTGTTTTGTTT
TGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_l08.g1 MSMg01no499_l08.g1 CHROMAT_FILE:
MSMg01no499_l08.g1 PHD_FILE: MSMg01no499_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:09 2005
         (625 letters)



>mm_chr2_120227241_120228265
          Length = 1025

 Score = 1116 bits (577), Expect = 0.0
 Identities = 594/605 (98%), Gaps = 10/605 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggctgtatgttatacagtgtgtatgtatatttatgtacataaattatatttttaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttggctgtatgttatacagtgtgtatgtatatttatgtacataaattatatttttaatca 541

                                                                       
Query: 61  tagttaagttgaattatatttaattttgtttgtagagtgcttacatcatttttagatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tagttaagttgaattatatttaattttgtttgtagagtgcttacatcatttttagatctg 481

                                                                       
Query: 121 ttctgagtcaggacaagattttgtgcttgtgtgcttgttagctatttactgaaaacatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttctgagtcaggacaagattttgtgcttgtgtgcttgttagctatttactgaaaacatgg 421

                                                                       
Query: 181 cccaagattgtgagaccattgactaagatactcagtatgtttaccaagggagtgtttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cccaagattgtgagaccattgactaagatactcagtatgtttaccaagggagtgtttaac 361

                                                                       
Query: 241 acttcaa-----tttttattgagttcaaggatattaccaggaaatagggactgtatagaa 295
           |||||||          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acttcaaggaac-----attgagttcaaggatattaccaggaaatagggactgtatagaa 306

                                                                       
Query: 296 gaaagccagtttttctagtgagagaaacaaaagatctgaagccaaactgcgctctgtttt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 305 gaaagccagtttttctagtgagagaaacaaaagatctgaagccaaactgtgctctgtttt 246

                                                                       
Query: 356 tgagatggggatagtattctagatcatcactgtcatgtgactttgtttgtttgtttggag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgagatggggatagtattctagatcatcactgtcatgtgactttgtttgtttgtttggag 186

                                                                       
Query: 416 acagagtttttctctgtagctttgtgactgtcttggaattcactctgtacaccaggctag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acagagtttttctctgtagctttgtgactgtcttggaattcactctgtacaccaggctag 126

                                                                       
Query: 476 cctggaactcaccgagatccatctatctttgcccctgcaagtgctgggattaaaggtggt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cctggaactcaccgagatccatctatctttgcccctgcaagtgctgggattaaaggtggt 66

                                                                       
Query: 536 gcaccaccacggtctaccaggcttctctggtttttgaaataggttcttactatgtagccc 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gcaccaccacggtctaccaggcttctctggtttttgaaataggttcttactatgtagccc 6

                
Query: 596 aaggc 600
           |||||
Sbjct: 5   aaggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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