Query= MSMg01no499_m19.b1 MSMg01no499_m19.b1 CHROMAT_FILE:
MSMg01no499_m19.b1 PHD_FILE: MSMg01no499_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:16 2005
(668 letters)
>mm_chr2_107982184_107983248
Length = 1065
Score = 1249 bits (646), Expect = 0.0
Identities = 662/668 (99%), Gaps = 3/668 (0%)
Strand = Plus / Plus
Query: 1 aaaatttcagcctccttttttttttcttttagatgtcaaattaaacaaacttcagaagcc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatttcagccaccttttttttttcttttagatgtcaaattaaacaaacttcagaagcc 260
Query: 61 tgataaaataagggcaaatgggcctcttgtggtgtataaaaaggaaagccatggttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataaaataagggcaaatgggcctcttgtggtgtataaaaaggaaagccatggttttct 320
Query: 121 tttgacaatgtgaatttgagtcacttagttgtctttgggtaagaatgtttgaaaattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgacaatgtgaatttgagtcacttagttgtctttgggtaagaatgtttgaaaattata 380
Query: 181 ttactagtttggtataatcactgagcttactcacaaatctacgaagtaggttttcagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactagtttggtataatcactgagcttactcacaaatctacgaagtaggttttcagcct 440
Query: 241 ttcagttcctcaaagggtaatacatcaattgagtgagatttaaattgataatataaatca 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagttcctcaaagggtaagacatcaattgagtgagatttaaattgataatataaatca 500
Query: 301 gtatattcaacaatgattaaatatgttttctatgagtgtcctgcatcacctctagtagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatattcaacaatgattaaatatgttttctatgagtgtcctgcatcacctctagtagtc 560
Query: 361 aggttgcacaaaatattgaggtataacatggctgatggcaaggagcctgtgtgcatctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggttgcacaaaatattgaggtataacatggctgatggcaaggagcctgtgtgcatctct 620
Query: 421 tccttatccaactactttctggctctgtgctacaactcaatttttctctctaagactctc 480
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tccttatccagctactttctggctctg--ctacaactcaatttttctctctaagactctc 678
Query: 481 cttttttccaggtcaggaaatattttcttagcttcttcatctagcttctactctatgtac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttttttccaggtcaggaaatattttcttagcttcttcatctagcttctactctatgtac 738
Query: 541 ttttggcatttaacaggattttattgtattttagctatgtatgtgctctaagaaagcatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttggcatttaacaggattttattgtattttagctatgtatgtgctctaagaaagcatc 798
Query: 601 agcagctcgattatatccataaactttagaatgacacattaattttcactacttcttctt 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 799 agcagctcgattatatccataaactttagaatgacacattaattttcactactt-ttctt 857
Query: 661 cttcttct 668
||||||||
Sbjct: 858 cttcttct 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1065
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1055
Effective search space: 694190
Effective search space used: 694190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_m19.g1 MSMg01no499_m19.g1 CHROMAT_FILE:
MSMg01no499_m19.g1 PHD_FILE: MSMg01no499_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:16 2005
(513 letters)
>mm_chr2_108147999_108148911
Length = 913
Score = 899 bits (465), Expect = 0.0
Identities = 497/513 (96%), Gaps = 9/513 (1%)
Strand = Plus / Minus
Query: 1 tctttctctgtgaaaggaaactagcaatgaaaacaggatttcatgtccctttacatgttt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 795 tctttctctgtgaaaggaaactagcaatgaaaacaggatttcgtgtccctttacatgttt 736
Query: 61 tctttctgttttttttttttgttttttttttaagaaaatgaaaagatctagagacaacaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 735 tctttctgtttt---------ttttttttttaagaaaatgaaaagatctagagacaataa 685
Query: 121 gcaataagattggcggtactaagactggggatggaatcaaggaggaatgagcgcctgagg 180
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 684 gcagtaagattggcggtactaagactggggatggaatcaaggaggaaagagcgcctgagg 625
Query: 181 gctttcactttcttttctcccatttgaatttgattcactttttacagaatctcttctaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctttcactttcttttctcccatttgaatttgattcactttttacagaatctcttctaat 565
Query: 241 gttacttaaatatgtaaaaggtagaaaaaagcagcaaataaattcaggacaaacatgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttacttaaatatgtaaaaggtagaaaaaagcagcaaataaattcaggacaaacatgact 505
Query: 301 catgctttgaatgtaattatctgcattctacaatatctttctacagtggtgttatgaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catgctttgaatgtaattatctgcattctacaatatctttctacagtggtgttatgaaag 445
Query: 361 gtttagttagcgtttacacaagtattgagccagccatgcagtaatatgagcaacgcagga 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 444 gtttagttagcgtttacacaagtattgagccagtcatgcagtaatatgagcaaggcagga 385
Query: 421 ttgataagtgaatgcccacctgttgtgactacaggtcagtcttgctgaaaccacacagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgataagtgaatgcccacctgttgtgactacaggtcagtcttgctgaaaccacacagga 325
Query: 481 aatatcacgaatcacagtatggatgaacatcac 513
||| |||||||||||||||||||||||||||||
Sbjct: 324 aatgtcacgaatcacagtatggatgaacatcac 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
