BAC Information

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BAC

Clone NameMSMg01-499O05
Chromosome2 (Build37)
Map Location 151,028,590 - 151,028,833
singlet/doubletsinglet
Overlap genenone
Upstream geneEG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik
Downstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499O05.T7 (MSMg01no499_o05.b1)MSMg01-499O05.TJ (MSMg01no499_o05.g1)
ACCAG575863AG575864
length768719
length of high quality
(start - end)
244 (74 - 317)49 (232 - 280)
definitionCHROMAT_FILE: MSMg01no499_o05.b1 PHD_FILE: MSMg01no499_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:23 2005CHROMAT_FILE: MSMg01no499_o05.g1 PHD_FILE: MSMg01no499_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTCAGTACTGCGGCGGAAT
CTGCTTTCCTGACTAAAGAAGCCTTCGTCCCCTGAAAAAGTGCTGACTGG
GCATAATTCATATTTTAGGTATTTATCTGCACTTCAGTACTTACTTAGCT
ATACTGTACTACATTGCCAATAGTTCATTTTCTGTCACATATAAAACATT
TCCTCTTTCCTAGAAACTAAACAGCTGTGCAACTGACCCATCAGGAATTC
TGAAGGACCTTGGGATACACAGCTCTTCTTAATGGGGGCATGAACTTCAT
TACAAGTCACCAAGGTTCTTTATTTAGCCAACATGACAAACTTACCTTCT
CCACAGGGAAAGCTGAGATTCACTGTGTGCTCATTGCCACCTCCAGCCTT
TCTGTCTGAAGGGACGACAGTTTTTCCTGCAATTGGGTCTAGGACAAATG
GGCCTTGCAGGCTTTCATTCCCTTTTGCTGCCTGGGGCCCAAAGGCCTCC
GGGTCAAGCAGCTGGCGTGCATTAAGTTTGAGTGCAAAGGCTTCTGGGTG
AAGCAGTTGCCAAGCTTTGCTATTGCTCTTGCACAAAGGTTTCTGGGTGA
AGCAGTTCTTGGGTGGTGCTGCTGCTTGGTTAGGGAGGACTCCTGTTGAT
CCCGATGGTGTGAGCTCTGAGACGCTGTTATTTCAGTAGAAAAAGGTGTT
ATATGAAGTAAATGTCTAAAATCTTTAACTATCCTAAATGTAGATACTTA
ACTAGGAATACCTAAAAC
GGGGGGACTTGCTTACCGCGGAACNANAGAAGGATTTGCANNTAACGGGG
GAAGNNGNANNNAANNNNNNNNANNANNNNAGNNNNNNGAGTCAGGCCCC
AGAGAGNAGNCNNGGCGGNCCGGGAACACACNCTGNAGACCAGGCNAGCC
NCAAACNCAGAAANCCGCCGGCCNCNGCCNCCCAAGNGCNGAGAANAAAG
GCAGGCGCCACCACGCCGGGCTTATTTTTTATTTAATTATGTACTTAATG
TATAAGGGTGCTTTGACTACATGTACTACCCANGNATACCTTTTCATGTT
TTANNCCCANNACAGANGGNCGCGAGCNGCCATTTTTTTGCTGCCCATTA
AACTCAGGACCTCTAGAAGAGCAGCCAGTGCTCTTCTCCCCCCCTACATG
TAAGGTTAGTTGAGTGGGTGCCAAAATGGGCTAAATGGCAAGGAGGGTCT
AGAAGGAAGAGATGCTTAGGGAAACAAATGTCGTAAGGCACGCGCGAGAG
TGCATGCAGGCTTTCTGAGAATTATTGCTACCTCAACTTTTGAGGGTAGA
ACTCTTATAACATAATATGGAAAATACCTCGACAAGACTTCCGATATCCA
TCATAGACGTATGGGAATCGGACCAAAAACGGCGCGGTATTTTTTTTTTT
TTTTAGTATGAGCCATTTCCCCCTTAACAACATTACAACTTGATCTCATT
GAAATCTCTCGTGCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_o05.b1 MSMg01no499_o05.b1 CHROMAT_FILE:
MSMg01no499_o05.b1 PHD_FILE: MSMg01no499_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:23 2005
         (244 letters)



>mm_chr2_151028390_151029033
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgtcccctgaaaaagtgctgactgggcataattcatattttaggtatttatctgcact 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgtcccctgaaaaagggctgactgggcataattcatattttaggtatttatctgcact 260

                                                                       
Query: 61  tcagtacttacttagctatactgtactacattgccaatagttcattttctgtcacatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtacttacttagctatactgtactacattgccaatagttcattttctgtcacatata 320

                                                                       
Query: 121 aaacatttcctctttcctagaaactaaacagctgtgcaactgacccatcaggaattctga 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aaacatttcctctttcctagaaactaaacagctgtgcaactgacacatcaggaattctga 380

                                                                       
Query: 181 aggaccttgggatacacagctcttcttaatgggggcatgaacttcattacaagtcaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaccttgggatacacagctcttcttaatgggggcatgaacttcattacaagtcaccaa 440

               
Query: 241 ggtt 244
           ||||
Sbjct: 441 ggtt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)