BAC Information

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BAC

Clone NameMSMg01-499O07
Chromosome2 (Build37)
Map Location 68,821,914 - 68,822,057
singlet/doubletsinglet
Overlap geneLass6
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443
Downstream geneNostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499O07.T7 (MSMg01no499_o07.b1)MSMg01-499O07.TJ (MSMg01no499_o07.g1)
ACCAG575867AG575868
length590713
length of high quality
(start - end)
145 (380 - 524)59 (244 - 302)
definitionCHROMAT_FILE: MSMg01no499_o07.b1 PHD_FILE: MSMg01no499_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:24 2005CHROMAT_FILE: MSMg01no499_o07.g1 PHD_FILE: MSMg01no499_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTAGTGGTCNGCNCAGCCGCAATGNCTGACATATCTCTGACTCACTTTCA
TACCATTGCTATCTAACCCTAGACTTTCTCAACTGCCACATACCAAAGCC
AGGTGACAGGATGCCTTCCTATATAAAGACATTCTGGGACCAGCCCTTGG
GAGTTCTGGAGACAAGGTTGCACGTAGCCCAGATTGGCTTCAAACTTTTT
TTGTCGTTGACTATGATTTTGAAATTAGCCTCCTGCTTTACTTCCTGAGG
GCGGGGATCGTTGGCTGCTTCAACCNGGCAGGNANANGCAGNGCNAAGGA
TTGTTTTCCCCCCCCCTCTGCTTTTTAGGCAAGCACTCTATCAACTGAAC
TACATCCCCAGCCCCCATGTGCCCACTTTAGAAGATGAAACAATATCAAT
TGTGTGTTAATTACATTAATTGAAGGCTTATATAGGAATGCTTACTCATT
TACTGCCATGAAGTAACGTGTTCACATTCCTCATTGGTGTCTGTCTTTGA
CTGCAGTGGAGTCACTTCATAACTTCCAGAAGAAACCAGCAGACTTTGTT
CTTTTTACCCCCATTGCAGTTGTGTTTGGCATCTACTTTA
ACCCCCGCATGAANGGGGAGGTCCGGGGNGTCCGGTTTCCTACCGGCGNG
AANANAGAAGTTTCAGGACCGGGGGGNAANAACGCNAAACANAGCCAGCA
NNNAACCAGAGTGCCCACGAGCANCAAGAAGGCACGGGNACNNAACGAGN
CAANNNNANGGGGACACCAGGNCNCACGGNGNAGCNCAGACNNGCAGAAN
ACCGCANAAGCCNCCGGAGNCCGGGCANNANANGNCTGTTTTACACACTC
AGCTTCATTTGACTAATTATTAAGTTGGATGCTCAGAGGAGCCTTTTGAC
CTGTTTTTTTTTAGCCAGGNCNNCAGNGANCCNCNAGGGGCGGGGCTGAG
AGACACCCNCAGNNNCGCAAGGGCACNNCNAAANNACGGAGACCGAGGGC
CCCCCAAACCAGATACGCTCGGCACAANNAACAAACGCAGCAACACGAGG
GCACAGGGANCNACCNCCGGGAAGCCACCAGGGACCAGGGACANAANCAC
NCCCAGGCGGGCAGAGACGGGGAACAGGAAAACAGGAAAGCGACCGGNCC
AACCNAACCAGCGAAGACCCAAACAACACACACAGCGAAGCCGCACCCCA
AAGCCCCCNGAGGCGAGAACGAANCCAGGGNGACAACGTCTCTCAAAAAC
AAAAGAGAACAACGATGCACTTAAGATACCGAGGCAACAAATGACTGGGG
GATAAGAGTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_o07.b1 MSMg01no499_o07.b1 CHROMAT_FILE:
MSMg01no499_o07.b1 PHD_FILE: MSMg01no499_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:24 2005
         (145 letters)



>mm_chr2_68821714_68822258
          Length = 545

 Score =  255 bits (132), Expect = 7e-73
 Identities = 141/144 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagatgaaacaatatcaattgtgtgttaattacattaattgaaggcttatataggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagatgaaacaatatcaattgtgtgttaattacattaattgaaggcttatataggaat 260

                                                                       
Query: 61  gcttactcatttactgccatgaagtaacgtgttcacattcctcattggtgtctgtctttg 120
           ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||
Sbjct: 261 gcttactcatttactgccacgaagtaacatgttcacattcctcattggcgtctgtctttg 320

                                   
Query: 121 actgcagtggagtcacttcataac 144
           ||||||||||||||||||||||||
Sbjct: 321 actgcagtggagtcacttcataac 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)