BAC Information

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BAC

Clone NameMSMg01-500C22
Chromosome2 (Build37)
Map Location 160,511,302 - 160,651,981
singlet/doubletdoublet
Overlap geneTop1, Plcg1, Zhx3
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream geneLpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500C22.T7 (MSMg01no500_c22.b1)MSMg01-500C22.TJ (MSMg01no500_c22.g1)
ACCAG576084AG576085
length661668
length of high quality
(start - end)		514 (51 - 564)504 (57 - 560)
definitionCHROMAT_FILE: MSMg01no500_c22.b1 PHD_FILE: MSMg01no500_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:47 2005CHROMAT_FILE: MSMg01no500_c22.g1 PHD_FILE: MSMg01no500_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,511,302 - 160,511,815)(160,651,496 - 160,651,981)
sequence
CGACTCCTATAGGTCGAGGATCCGCGGAATTCACTTAATGACTCGGGGGA
TTAGAAGGACAGGCGTGTGTGCTTTGCCCCCGATTGTCGTTGCTGGCCTG
CTTGTCAGCAGTGAGTCCTGTAGAGAATCCAGATGCTTCACTTGAACTTC
ATCTTCGAAGTGTGGTAACTCACTATTTGCTTTCACACACGACACTTAGG
ATGGGGCATTAACTTTGAACCATTGGATGTTGTAGTGTCTTCTTTGGATC
TCCAGGGCTTTGTAATTGAAGGCGAAACAGCTGTAGAAGTGGCATTTAGG
AATTGGGGAAAATGTGCTGGAATAAGAAGAGCTAATCTTTTTAAGCCTTC
AGATTTTATTGCAAGCAAACTGGTTTTAATGCTTTTAGAAAGAAAGGAGA
ATACATTATCTATACTTCATGCTGTGAATATATTTTACTGTTGAGACTAG
ATACTTACACTTCAGATCCACCACTTCATGAATGGCAGCTTTATTTTGGG
AGGCCATTTTCTTTACTGAGTTAAGTCAGTGAGGTCTAATTTGAAGAGAT
GTAACAAGCCAACCTAGGAAAGAACATTCCAAGGTTTCTGAGTGTTTGTC
CGTGTCACCGGCAATTCTCCTTCCCCTTCCCCTTCCCCCATCATCATCAC
TACCACCACCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACAGTCTGTTGGTTCCTTTACTTGATGATGAAAAATAGGCAATC
AGATAGTCTTCTCTTATACTACCCTGAATTCACCAGGGAACATTTTAGTT
TTGGCCAAATGTAGCATCTGGAGATATCCACTGCAGATACCCACTGTATG
ACCTCACTTTCCCTATCTCAGTGTTCAATTGGTCTTCCTTAACAAACCAT
AAAATTATTTCCATCCTCCAGGGTAGCTCTTCCAAATTAAAAAAAAACAA
AAGTTCTCTTTGAGCTTTCTCATCTACAAACAACACTTTAGAGATGGTTA
ATCTTCATTGTCAACTTGACTGGGTTTGGAAGCATCTAAGAAACAGGGTG
TGGATGAGGTTATTTCTGATTAACTGGAGAGGGAACACCCACCCTGAATG
TGGGTAGCACTATCCTTTAGAATGGGGATCTACAATGAATAAAAGAGTCA
GGGGAAAGGGTAAGTGAGCTTTACTACCAGTATTTATCTCTCTCCACTTC
TTGACTAAGACCACAAAACCAGTTCTTGCTCCTGCTACCATGTTTCCCTG
CCACGAATTATATCTTCTCCAACTCCAAGCCAAAATAAATGAACTAAAGT
TCCTTTTGTCACCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_c22.b1 MSMg01no500_c22.b1 CHROMAT_FILE:
MSMg01no500_c22.b1 PHD_FILE: MSMg01no500_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:47 2005
         (514 letters)



>mm_chr2_160511102_160512015
          Length = 914

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaaggacaggcgtgtgtgctttgcccccgattgtcgttgctggcctgcttgtcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaggacaggcgtgtgtgctttgcccccgattgtcgttgctggcctgcttgtcagca 260

                                                                       
Query: 61  gtgagtcctgtagagaatccagatgcttcacttgaacttcatcttcgaagtgtggtaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagtcctgtagagaatccagatgcttcacttgaacttcatcttcgaagtgtggtaact 320

                                                                       
Query: 121 cactatttgctttcacacacgacacttaggatggggcattaactttgaaccattggatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactatttgctttcacacacgacacttaggatggggcattaactttgaaccattggatgt 380

                                                                       
Query: 181 tgtagtgtcttctttggatctccagggctttgtaattgaaggcgaaacagctgtagaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagtgtcttctttggatctccagggctttgtaattgaaggcgaaacagctgtagaagt 440

                                                                       
Query: 241 ggcatttaggaattggggaaaatgtgctggaataagaagagctaatctttttaagccttc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ggcatttaggaattggggaaaatgtgctggaataagaagagctaatctttttaaaccttc 500

                                                                       
Query: 301 agattttattgcaagcaaactggttttaatgcttttagaaagaaaggagaatacattatc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agattttgttgcaagcaaactggttttaatgcttttagaaagaaaggagaatacattatc 560

                                                                       
Query: 361 tatacttcatgctgtgaatatattttactgttgagactagatacttacacttcagatcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatacttcatgctgtgaatatattttactgttgagactagatacttacacttcagatcca 620

                                                                       
Query: 421 ccacttcatgaatggcagctttattttgggaggccattttctttactgagttaagtcagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacttcatgaatggcagctttattttgggaggccattttctttactgagttaagtcagt 680

                                             
Query: 481 gaggtctaatttgaagagatgtaacaagccaacc 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggtctaatttgaagagatgtaacaagccaacc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no500_c22.g1 MSMg01no500_c22.g1 CHROMAT_FILE:
MSMg01no500_c22.g1 PHD_FILE: MSMg01no500_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:47 2005
         (504 letters)



>mm_chr2_160651496_160652399
          Length = 904

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtctgttggttcctttacttgatgatgaaaaataggcaatcagatagtcttctctta 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acagactgttggttcctttacttgatgatgaaaaataggcaatcagatagtcttctctta 427

                                                                       
Query: 61  tactaccctgaattcaccagggaacattttagttttggccaaatgtagcatctggagata 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 426 tactaccctgaattcaccagggaacatgttagttttggccaaatgtagcatctggagata 367

                                                                       
Query: 121 tccactgcagatacccactgtatgacctcactttccctatctcagtgttcaattggtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 366 tccactgcagatacccactgtatgacctcactttccctatctcagtgttcaattgatctt 307

                                                                       
Query: 181 ccttaacaaaccataaaattatttccatcctccagggtagctcttccaaattaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccttaacaaaccataaaattatttccatcctccagggtagctcttccaaattaaaaaaaa 247

                                                                       
Query: 241 acaaaagttctctttgagctttctcatctacaaacaacactttagagatggttaatcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acaaaagttctctttgagctttctcatctacaaacaacactttagagatggttaatcttc 187

                                                                       
Query: 301 attgtcaacttgactgggtttggaagcatctaagaaacagggtgtggatgaggttatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attgtcaacttgactgggtttggaagcatctaagaaacagggtgtggatgaggttatttc 127

                                                                       
Query: 361 tgattaactggagagggaacacccaccctgaatgtgggtagcactatcctttagaatggg 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tgattaactggagagggaagacccaccctgaatgtgggtagcactatcctttagaatggg 67

                                                                       
Query: 421 gatctacaatgaataaaagagtcaggggaaagggtaagtgagctttactaccagtattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gatctacaatgaataaaagagtcaggggaaagggtaagtgagctttactaccagtattta 7

                 
Query: 481 tctctc 486
           ||||||
Sbjct: 6   tctctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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