BAC Information

Click to search

BAC

Clone NameMSMg01-500F11
Chromosome2 (Build37)
Map Location 155,023,412 - 155,176,275
singlet/doubletdoublet
Overlap geneItch, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
Upstream geneU46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877
Downstream geneTrp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500F11.T7 (MSMg01no500_f11.b1)MSMg01-500F11.TJ (MSMg01no500_f11.g1)
ACCAG576206AG576207
length783693
length of high quality
(start - end)		234 (53 - 286)610 (54 - 663)
definitionCHROMAT_FILE: MSMg01no500_f11.b1 PHD_FILE: MSMg01no500_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:58 2005CHROMAT_FILE: MSMg01no500_f11.g1 PHD_FILE: MSMg01no500_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,176,043 - 155,176,275)(155,023,412 - 155,024,021)
sequence
CCCACTATTTCGAGAGCATCCGCGGAATTCCATAAATACCCCAAATAGGC
GAGAACTTTTAGTATTGCCTCTGACTCCCGAGTACTGGGATTACAGGTTC
GAGCCACCATGCACAGCCTGATTATTCTTTTAAACATTGACTGAATCATT
AATAGAGTCTGAAGAGAATTTTGACAGTCTGCTAGCTGAGATGGGAAATA
CACACTTTAGACCCCGATATAGCTTTCATACATGTCACCAACTCTTCTAA
ATGACAACAATTAATTAGGGATGGCTTACAGTTTCTATGTTTATTCATAT
CATAGGACAGGAGCATGCAGTTTGCAGCAACATGGTGCTGGAGAATCNAG
ATTCTAATCTTCTCTGAAGCAGCCAGATGAACTGCTTCTACGCAAGCAGG
AGAAGGGCCCTTCAACTGTTCCTTTCAACGGGAAATTTGACATAAAATAA
ACCCCCCCCCGGGACTCTTCTAAAAAGGGCACCCTCCAAAGGCTTTTCCG
TGGGCCACCTTTTCCACCTCTACCCCTAATTTTTCGGGCCCCTTTCTTCC
ACATTCCCCAAGTGTTGTTTTTTTTGGTAACTGTTTTTTTCCGAAAATTT
TGTAGGCTATTCCTCCCTTTTTTTCAACCCCCTTGGAATTAATTCATTAG
TCCTTTTTCCCCGGTGCTTCTCTTTATTAACCACCTTTTCTCTCCTTTCC
ATTTGTGGGGGCGGGCGACCACCCCCTTAATTACGGTGGACCCCCTTTTC
CTTACCGTCTCCTTTGTGTAAATTTACTTGGTC

TGGCGGCCGCCTGGTTTCATAATTTAGGTGACCTATAGAATTTCCCGCGA
AATTCTGGGAGTAAAGGTGTGCGCACCACTGCCTGGCTTCTCTCCAGTGC
ATCTTAACTTGATATCCTCGTCTTGGTTTTTTATTTGTTTTTTGGGTTTT
TGGAATTCATTATGTAGACCAGGCTGTCCTGGAACTCAGAGTTTCACCTG
CCTCTGCCTCCTCAGTGCTGGGGTCAAAAATATGTGCTACCATGCCTGGC
TGTTGCTTGCATTTTATGGATAAAGAAACTGAAGGTTAAAGAATGTTGCC
CAGAGTTCCAGGGCAGGTATAAAGATAAACAAAAGAAGTAGGGAAGGATA
TTTCAAAAAGAATTTTTAAGTTGCTGAAACAGAGAAAACAATTTGTTAAT
GGGGGAATATTTCACTTGGCCAGTGACAGTTGTGACTTGTTTGGGAAAAT
GATCAATAGCCATGTGTGTGAAATCTCAGGGTAAAAGAGAAATTGGATTG
ATGAAATCTGTTTTAGGAGTAAGCTCTGTCTACAGTATCGTATGTAGGCC
CAAGTGAGGACCAGGAGCAGCAGAACCATGTGGGCAGCTGCTTGGACAGT
GCAGGTGAAGATAGCTAGAGTCAGGGTGGGAATCGAAGATAAGGGATGAG
TATCAAGACTGCAAAGGTCTCATGAGTGAACTCAGGTGGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_f11.b1 MSMg01no500_f11.b1 CHROMAT_FILE:
MSMg01no500_f11.b1 PHD_FILE: MSMg01no500_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
         (234 letters)



>mm_chr2_155175825_155176458
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacttttagtattgcctctgactcccgagtactgggattacaggttcgagccaccatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaacttttagtattgcctctgactcccgagtactgggattacaggttcgagccaccatgc 392

                                                                       
Query: 61  acagcctgattattcttttaaacattgactgaatcattaatagagtctgaagagaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acagcctgattattcttttaaacattgactgaatcattaatagagtctgaagagaatttt 332

                                                                       
Query: 121 gacagtctgctagctgagatgggaaatacacactttagaccccgatatagctttcataca 180
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 331 gacagtctgctagctgagatgggaaatacacactttagaccccgagaaagctttcataca 272

                                                                
Query: 181 tgtcaccaactcttctaaatgacaacaattaattagggatggcttacagtttc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtcaccaactcttctaaatgacaacaattaattagggatggcttacagtttc 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no500_f11.g1 MSMg01no500_f11.g1 CHROMAT_FILE:
MSMg01no500_f11.g1 PHD_FILE: MSMg01no500_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
         (610 letters)



>mm_chr2_155023212_155024221
          Length = 1010

 Score = 1164 bits (602), Expect = 0.0
 Identities = 608/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggagtaaaggtgtgcgcaccactgcctggcttctctccagtgcatcttaacttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggagtaaaggtgtgcgcaccactgcctggcttctctccagtgcatcttaacttgat 260

                                                                       
Query: 61  atcctcgtcttggttttttatttgttttttgggtttttggaattcattatgtagaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctcgtcttggttttttatttgttttttgggtttttggaattcattatgtagaccagg 320

                                                                       
Query: 121 ctgtcctggaactcagagtttcacctgcctctgcctcctcagtgctggggtcaaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcctggaactcagagtttcacctgcctctgcctcctcagtgctggggtcaaaaatat 380

                                                                       
Query: 181 gtgctaccatgcctggctgttgcttgcattttatggataaagaaactgaaggttaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctaccatgcctggctgttgcttgcattttatggataaagaaactgaaggttaaagaa 440

                                                                       
Query: 241 tgttgcccagagttccagggcaggtataaagataaacaaaagaagtagggaaggatattt 300
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgcccagagttccagggcaggtataaagataaacaaaagaagtagggaaggatattt 500

                                                                       
Query: 301 caaaaagaatttttaagttgctgaaacagagaaaacaatttgttaatgggggaatatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaaagaatttttaagttgctgaaacagagaaaacaatttgttaatgggggaatatttc 560

                                                                       
Query: 361 acttggccagtgacagttgtgacttgtttgggaaaatgatcaatagccatgtgtgtgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttggccagtgacagttgtgacttgtttgggaaaatgatcaatagccatgtgtgtgaaa 620

                                                                       
Query: 421 tctcagggtaaaagagaaattggattgatgaaatctgttttaggagtaagctctgtctac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcagggtaaaagagaaattggattgatgaaatctgttttaggagtaagctctgtctac 680

                                                                       
Query: 481 agtatcgtatgtaggcccaagtgaggaccaggagcagcagaaccatgtgggcagctgctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtatcgtatgtaggcccaagtgaggaccaggagcagcagaaccatgtgggcagctgctt 740

                                                                       
Query: 541 ggacagtgcaggtgaagatagctagagtcagggtgggaatcgaagataagggatgagtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggacagtgcaggtgaagatagctagagtcagggtgggaatcgaagataagggatgagtat 800

                     
Query: 601 caagactgca 610
           ||||||||||
Sbjct: 801 caagactgca 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |