XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATA
TATGACTAATATATAGATAATATATAGAGATATACATACATATACACACA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CATATTCTGGGTTCATATGCTGAAGCCCTAACCCTGGATGGCTATATTTG
AAGTAGGAACCTAAGGCTTTACAAAGTTATGGAAAGGCTATTACTGGGCA
TCCTGACTGAGAGTTTTATATTCTGTCAAGATCTGAGTTGATGAACTCTC
AACATTGACCATATTCTAACCTTGAAATCCCTAGTTGGACCCAATAGTGT
CTCGTGCGTGTTGCTGGTTTTTGAACTTCTTTTCCCACATCCCATCTGGT
ACTAGAGATTTTTTTTCAAGAATTAACAGAGTGGAAGAAGTAACCTTTCT
ATTCCCACAGTGGGTGTCACCTGAACATGTGAGTACCCCACCCTGCTTTG
TGCATATTGTATATTACTTATATGGCTTAGCATCCCCACAGATCCTGAAG
TTAGAAAACCACCCCTCAGTACCATCCATGAGCCAGTTCTCTGGCTTTCA
TAACCTTCAGGAATGCATGCAGTTCACGCCCAAATTGGCAGTAGGTAATG
TACTTTGTTCTCAAAGTACAGCCCTGCAAGACGCATAATATGAAACATCA
AA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGACATCTACCTGCTTCTGTT
TCCTCAGTGCTGAAATGAAAGATGTGGACCTATGTCTGGCTAAAGATCAC
TGATTGATAGGAAAAAAAATCAACACTGAAAACATGTTGACTCTTAAATT
TTATAAATGGAAAAATTTCCCNGAATATTCAAATTGTCGAAATGTTTCCA
AATTCAGGAATTTTATTTTTTGGAAAGGNAAAATTCTGAACCCAATTCTT
CCCCCCNNNNNNCNNNNNNNNGGGGGCCTCTGGGGCGGGGGCGGGGCGGG
GGGAGGACGGGGGGGGCGGGAGGCGGGCTCGGGGGCGGGGCTNNNNNNNN
NTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNTNNTNTTTNNN
NTNNNTTTTTTTNTTTTTTTNTTTTTTNNTTTTNNNTNNTTTTNNNTTNT
TNNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTNTTTTTTTTTNNN
NNTTNTTTTTTNTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTNTTTNTTT
NTTNTTTTTNNTTTTTTTTTTNNNNNTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTNTNNTNTTTNTTTNTTTTTTTTTTTTNTTTTNNTTTTTT
TNTTTTTTNTTTTTATTTTGTTTGGTTG

Query= MSMg01no500_f16.b1 MSMg01no500_f16.b1 CHROMAT_FILE:
MSMg01no500_f16.b1 PHD_FILE: MSMg01no500_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
         (665 letters)



>mm_chr2_48232777_48233841
          Length = 1065

 Score = 1143 bits (591), Expect = 0.0
 Identities = 632/661 (95%), Gaps = 24/661 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatatatgactaatatatagataatatatagagatatacatacatatacacac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  
Sbjct: 229 gaattcatatatatgagtaatatatagataatatatagagatatacatacatatacac-- 286

                                                                       
Query: 65  atacatacatacatacatacatacatacatacatacatacatacatacatacatattctg 124
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ----------------------acatacatacatacatacatacatacatacatattctg 324

                                                                       
Query: 125 ggttcatatgctgaagccctaaccctggatggctatatttgaagtaggaacctaaggctt 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ggttcatatgctgaagccctaaccctggatggctatatttggagtaggaacctaaggctt 384

                                                                       
Query: 185 tacaaagttatggaaaggctattactgggcatcctgactgagagttttatattctgtcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaaagttatggaaaggctattactgggcatcctgactgagagttttatattctgtcaa 444

                                                                       
Query: 245 gatctgagttgatgaactctcaacattgaccatattctaaccttgaaatccctagttgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatctgagttgatgaactctcaacattgaccatattctaaccttgaaatccctagttgga 504

                                                                       
Query: 305 cccaatagtgtctcgtgcgtgttgctggtttttgaacttcttttcccacatcccatctgg 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 cccaatagtgtctcgtgcgtgttgctgatttttgaacttcttttcccacatcccatctgg 564

                                                                       
Query: 365 tactagagattttttttcaagaattaacagagtggaagaagtaacctttctattcccaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tactagagattttttttcaagaattaacagagtggaagaagtaacctttctattcccaca 624

                                                                       
Query: 425 gtgggtgtcacctgaacatgtgagtaccccaccctgctttgtgcatattgtatattactt 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 gtgggtgtcacctgaacatgtgagtaccccaccctgctttgtgcatattgtatagtactt 684

                                                                       
Query: 485 atatggcttagcatccccacagatcctgaagttagaaaaccacccctcagtaccatccat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atatggcttagcatccccacagatcctgaagttagaaaaccacccctcagtaccatccat 744

                                                                       
Query: 545 gagccagttctctggctttcataaccttcaggaatgcatgcagttcacgcccaaattggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagccagttctctggctttcataaccttcaggaatgcatgcagttcacgcccaaattggc 804

                                                                       
Query: 605 agtaggtaatgtactttgttctcaaagtacagccctgcaagacgcataatatgaaacatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 agtaggtaatgtactttgttctcaaagtacagccctgcaagacgcataatacgaaacatc 864

            
Query: 665 a 665
           |
Sbjct: 865 a 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)