XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCTTTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCGTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCTACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAGTCCAATTTCTCTTATGAATATCGATGCAAAAATCCTC
AATAAAATTCTTGCTAACCGAATCCAAGAACACATTAAAGCAATCAGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACACTCCTAGTCACTCCCATTCTCAGGGTGTAATAGTGGGGTGAT
GGGCGAGCAACTAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGT
CACGCTGCGGGTTATAAAAGCAACGCCATTTTCCCGGTTTGGGATCTTCC
TGAGAAGCAAGCAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTTGCG
TCTTTCTTGCCGGTGGAGCGGGACACAATATTTTTATATATTAAAAAATA
TTCTTGCCGGGCGGTGGTGGCACACATCTTTAATCCCAGCACTTGGGAGG
TAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGCGA
GTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAA
TCAATCAATCAATCAATAAATAAATAATCAGAATCAACAAAACAACAATC
TAGCTGACAACATTCCCAAATTACTTTTGCATTCCAAATTTTTAAAATGC
CAATGTAATAAGTTTGTAAAAAAAAAAAAAAAACTAGAAAACATGTTTAT
CTCAAAGATAAAACTCAGCCTGCATGTAAGCTGTAAAAAGAAAATATATT
GAGAGCTGCAGGAGAGGAATACTTTACCACATATGAAGGCAGCCATGAAG
TAT

Query= MSMg01no500_l15.g1 MSMg01no500_l15.g1 CHROMAT_FILE:
MSMg01no500_l15.g1 PHD_FILE: MSMg01no500_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:24 2005
         (560 letters)



>mm_chr2_139690298_139691254
          Length = 957

 Score =  986 bits (510), Expect = 0.0
 Identities = 545/560 (97%), Gaps = 7/560 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctagtcactcccattctcagggtgtaatagtggggtgatgggcgagcaactaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctcctagtcactcccattctcagggtgtaatagtggggtgatgggcgagcaactaatcag 264

                                                                       
Query: 61  gagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcaacgcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcagcgcca 324

                                                                       
Query: 121 ttttcccggtttgggatcttcctgagaagcaagcaataaagctcttgccgcggaagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ttttcccggtttgggatcttcctgagaagcaagcaataaagctcttgccacggaagattc 384

                                                                       
Query: 181 tggtttgttgcgtctttcttgccggtggagcgggacacaatatttttatatattaaaaaa 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tggtttgttgcgtctttcttgccggtggagtgggacacaatatttttatatattaaaaaa 444

                                                                       
Query: 241 tattcttgccgggcggtggtggcacacatctttaatcccagcacttgggaggtagagaca 300
           || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taatcaggccgggcggtggtggcacacatctttaatcccagcacttgggaggtagagaca 504

                                                                       
Query: 301 ggtggatttctgagttcgaggccagcctggtctacagagcgagttccaggacagccaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtggatttctgagttcgaggccagcctggtctacagagcgagttccaggacagccaggg 564

                                                                       
Query: 361 ctacacagagaaaccctgtctcgaaaaaccaatcaatcaatcaatcaataaataaataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |
Sbjct: 565 ctacacagagaaaccctgtctcgaaaaaccaatcaatcaatcaatcaatcaataa----t 620

                                                                       
Query: 421 cagaatcaacaaaacaacaatctagctgacaacattcccaaattacttttgcattccaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 cagaatcaacaaaacaacaatctagctgacaacattcccaaattacttttgcattccaat 680

                                                                       
Query: 481 tttttaaaatgccaatgtaataagtttgtaaaaaaaaaaaaaaaactagaaaacatgttt 540
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 681 tttttaaaatgccaatgtaataagtttgtaaaaaaaaaaaaa---ctagaaaacatgttt 737

                               
Query: 541 atctcaaagataaaactcag 560
           ||||||||||||||||||||
Sbjct: 738 atctcaaagataaaactcag 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 957
Length adjustment: 10
Effective length of query: 550
Effective length of database: 947
Effective search space:   520850
Effective search space used:   520850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)