BAC Information

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BAC

Clone NameMSMg01-500M12
Chromosome2 (Build37)
Map Location 158,439,600 - 158,440,144
singlet/doubletsinglet
Overlap geneSlc32a1
Upstream geneCtnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481
Downstream geneActr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500M12.T7 (MSMg01no500_m12.b1)MSMg01-500M12.TJ (MSMg01no500_m12.g1)
ACCAG576538AG576539
length694724
length of high quality
(start - end)
545 (64 - 608)52 (250 - 301)
definitionCHROMAT_FILE: MSMg01no500_m12.b1 PHD_FILE: MSMg01no500_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:28 2005CHROMAT_FILE: MSMg01no500_m12.g1 PHD_FILE: MSMg01no500_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTCACATTTTCAGAAATGCNGCGGAATCGCTGGGT
TGCTGCATGTTGCCTTCGAGAGAGGGCAGGAAGATCTGCGACGTGTAGCT
GAACACGATGATGCCAATGGAGATGGGAAACTTCTTGACGTCGATGTAGA
ACTTCACCTTCTCCCAGGCCCAATCACGCGCGCGAGAGAGACAGTAAGCG
ATGACCAGGATGTTGATGACGAAGTGGGCCAGCGTACACAGCAGACTGAA
CTTGGACACGGCCTTGAGATTCTTCAGGAAGGCGCAGGGCAGCAGCACTT
CTGTGGCTATGATGGACCAGGACTTCTGCGACACGGGCAGCCCCGGGAAA
CTGTTGTACATGAGGTTGCCGCTCACCACGACGTACAAGATACACGTCAT
CACCAGCTCGATGATCTGCGCCACATTGACCACGCGGCCGCCCAGGGTGG
GGAATCGAGGAGCGCAGCATGCGTTAGCTATGGCCACATACGAGTCCCGC
ACGCGCACCACCTCCCCGTCTTCGTTCTCCTCGTACAGGCACGCGATGAG
GATCTTGCCGGTGTAGCAGCACACCACTGCGGCGAAGATGATGAGGAACA
ACCCCAGGTAGCCGTCGTGGAGGATGGCGTAAGGTAGGCCCATCACGAAC
ATGCCCTGTGGTGCAAAGAGGCAACCAGACCCATGAGCTCCGCT
NTTACATGCAGTGGTAGTCTGGGGGCGCCTGGTTTCATCATGAGGGNGAA
CNANAGAAGTTCGCAAAATCCAGGACTTTGCACAACTGTGNTTTGGCTNN
NTNNCTTTTTTCCCCTATTTATTTTTTTTAGCTTTAAGCTTATTTTTATA
CAGATTTAGTGTTTAATTTGGATGCATTCTGCATGGAGTGTTTTCCAAAT
GTATTATTGCTGGATAGCTTATTCAGGACTAAATGGTTCATGGGAAGTTG
CATAAAGATTTATGCTTGACTCTGCATCTATTAAGCCTTCTATCATTACA
AAATTATTGTTTTTTTATGGGGAGGAATAAAAGATTTCAGAGTGATCTGT
GTGCTATGAAATCTTTTGTTAAAAGCAACTTTCGAAGGGCTTCTGTTTTG
TTGACAAGGAACGACCATGATAATCCTCCTTACCAACCCAATTTTCTGAT
TTATCAACCTCAAGTTTGCTGCTGTCTGTGACTGTTAAAATTCATTCTCA
TTTGCTTGGTTGGGCAGCTCTTTGGTGTGGGTTGTGAAACTGGGTGGGTG
GTGGGAATGCTCCCTTTGCCCTCCTTAATCAGTTCTTATCCTCACCTTGG
CATGTCTAAAAGTACTCAAACTGGTATGCCACTTGCCCTCCTAATTTCAT
TGTCCATTTGTGGTTAACTGCATAAATTTTAATCGCTACTTTTCTCCATT
GGTAAAGCATCCTTTTTATTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_m12.b1 MSMg01no500_m12.b1 CHROMAT_FILE:
MSMg01no500_m12.b1 PHD_FILE: MSMg01no500_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:28 2005
         (545 letters)



>mm_chr2_158439400_158440344
          Length = 945

 Score = 1038 bits (537), Expect = 0.0
 Identities = 543/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcgagagagggcaggaagatctgcgacgtgtagctgaacacgatgatgccaatggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttcgagagagggcaggaagatctgcgacgtgtagctgaacacgatgatgccaatggaga 686

                                                                       
Query: 61  tgggaaacttcttgacgtcgatgtagaacttcaccttctcccaggcccaatcacgcgcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgggaaacttcttgacgtcgatgtagaacttcaccttctcccaggcccaatcacgcgcgc 626

                                                                       
Query: 121 gagagagacagtaagcgatgaccaggatgttgatgacgaagtgggccagcgtacacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagagagacagtaagcgatgaccaggatgttgatgacgaagtgggccagcgtacacagca 566

                                                                       
Query: 181 gactgaacttggacacggccttgagattcttcaggaaggcgcagggcagcagcacttctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 565 gactgaacttggacacggccttgagattcttcaggaaggcgcagggcagcagcaccgctg 506

                                                                       
Query: 241 tggctatgatggaccaggacttctgcgacacgggcagccccgggaaactgttgtacatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggctatgatggaccaggacttctgcgacacgggcagccccgggaaactgttgtacatga 446

                                                                       
Query: 301 ggttgccgctcaccacgacgtacaagatacacgtcatcaccagctcgatgatctgcgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttgccgctcaccacgacgtacaagatacacgtcatcaccagctcgatgatctgcgcca 386

                                                                       
Query: 361 cattgaccacgcggccgcccagggtggggaatcgaggagcgcagcatgcgttagctatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattgaccacgcggccgcccagggtggggaatcgaggagcgcagcatgcgttagctatgg 326

                                                                       
Query: 421 ccacatacgagtcccgcacgcgcaccacctccccgtcttcgttctcctcgtacaggcacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacatacgagtcccgcacgcgcaccacctccccgtcttcgttctcctcgtacaggcacg 266

                                                                       
Query: 481 cgatgaggatcttgccggtgtagcagcacaccactgcggcgaagatgatgaggaacaacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgatgaggatcttgccggtgtagcagcacaccactgcggcgaagatgatgaggaacaacc 206

                
Query: 541 ccagg 545
           |||||
Sbjct: 205 ccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)