Query= MSMg01no500_m13.b1 MSMg01no500_m13.b1 CHROMAT_FILE:
MSMg01no500_m13.b1 PHD_FILE: MSMg01no500_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:29 2005
(270 letters)
>mm_chr2_10509513_10510185
Length = 673
Score = 470 bits (243), Expect = e-137
Identities = 265/273 (97%), Gaps = 3/273 (1%)
Strand = Plus / Minus
Query: 1 caagtgcccatcatgaaaacacactcatccctgtgcccacacacaatcctcaaagtgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caagtgcccatcatgaaaacacactcatccctgtgcccacacacaatcctcaaagtgttg 414
Query: 61 cacttgggttcaggactggtttctccctgttctacttcaccttgctatatctatgcaaca 120
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct: 413 cacttgggttcaggactggtttctccctgttctacttcaccctgctgtatctatacaaca 354
Query: 121 ggtgccgtatcctgatgatatccattaagtgactgtt-aaatctgctataggaagaaggg 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 353 ggtgccgtatcctgatgatatccattaagtgactgttaaaatctgctataggaagaaggg 294
Query: 180 ctcaaaacagcattcc--aggtctgggtattctgttagtccgtgtgtccatcacctcact 237
|||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 293 ctcaaaacagcattccagaggtctgtgtattctgttagtccgtgtctccatcacctcact 234
Query: 238 tcctatagcaggctggtttgttcctgtggatgc 270
|||||||||||||||||||||||||||||||||
Sbjct: 233 tcctatagcaggctggtttgttcctgtggatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 673
Length adjustment: 9
Effective length of query: 261
Effective length of database: 664
Effective search space: 173304
Effective search space used: 173304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no500_m13.g1 MSMg01no500_m13.g1 CHROMAT_FILE:
MSMg01no500_m13.g1 PHD_FILE: MSMg01no500_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:29 2005
(552 letters)
>mm_chr2_10332094_10333044
Length = 951
Score = 791 bits (409), Expect = 0.0
Identities = 430/437 (98%), Gaps = 1/437 (0%)
Strand = Plus / Plus
Query: 1 cctgtctctgtgctctgcggccagagtgaacaggccaggctgccgtgaacacatgatatt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cctgtctctgtgctctgcggccagagtgaacaggccaggctgctgtgaacacatgatatt 260
Query: 61 tacttaggttctggagatctcaactctaggaagcatttaaccactaagctaccatttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttaggttctggagatctcaactctaggaagcatttaaccactaagctaccatttccc 320
Query: 121 tagtcagagagtattcactttgagaacttcaattttcaaaatgaaatttcagtaatatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcagagagtattcactttgagaacttcaattttcaaaatgaaatttcagtaatatta 380
Query: 181 gtgggacttagccacttttttctttggagatcttgtttactaacaaaacttagtggtaaa 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gtgggacttagccacttttttctttggagatcttgtttattaacaaaacttagtggtaaa 440
Query: 241 ttgtggtctcaaacccagaatccacttccgtcagcctcctgcgtgctagaattacagttt 300
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttgtggtctcaaacccagaatccgcttccgtcagcctcctgagtgctagaattacagttt 500
Query: 301 tttcctatcatgcctggctaggtcagtctttcttctaactgaacattggaattgagagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcctatcatgcctggctaggtcagtctttcttctaactgaacattggaattgagagaa 560
Query: 361 gcagaggagaactcagtattagagaatttgatgtaaaaagaggataaagcattatgggta 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 561 tcagaggagaactcagtattagagaatttgatgtaaaa-gaggataaagcattatcggta 619
Query: 421 tgggagaagacagtgcc 437
|||||||||||||||||
Sbjct: 620 tgggagaagacagtgcc 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
